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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAACCTTCTCCGACTTCGTGGTTTCTGCATGACACCTACTGAACGGTTGCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAGgttctttattctttattataatttataaaaaacctgattccatagtcccaactaaacaagcagaacgttagcttcctgttctcattaaactttctgattccatag

Basic information

species Zea mays
transcript GRMZM2G150024_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G150024_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv07s0031g01410.t01 (Vitis vinifera), 5'ss of exon 9
AGGAACCTTCTCCGACTTCGTGGTTTCTGCATGACACCTACTGAACGGTTGCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAGgttctttattctttattataatttataaaaaacctg-attccatagtcccaactaaacaagcagaacgttagcttcctgttctcattaaactttctgattccatag
 |||| || || ||  | |||||||| ||||||||||| ||||| ||||| || || || ||||||||||||||||| ||||| || ||| |  || ||||| ||   || |||||| |      |   |    |  |||  | ||    || |      | |     |  |        ||   ||  || | |  | | | |  
CGGAATCTGCTTCGGTTACGTGGTTTTTGCATGACACCAACTGAGCGGTTACTTGTTTATCCATACATGGCTAATGGAAGTGTTGCTTCATGCCTAAGAGgtactgc-ttgtttattcttccacgtgctatttttatattgaagag----aattggctgtgaaatggttctgaacagcagtcgtgttggacatgcacaatgcttg-

upper sequence: GRMZM2G150024_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv18s0164g00070.t01 (Vitis vinifera), 5'ss of exon 9
AGGAACCTTCTCCGACTTCGTGGTTTCTGCATGACACCTACTGAACGGTTGCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAGgttctttat-tctttattata-atttataaaaaacctgattccatagtcccaactaaacaagcagaacgttagcttcctgttctcattaaactttctgattccatag
 |||| || ||||| ||||||||||| ||||||||||||||||||||| |||| || || || || ||||||||||| || || |||||| ||||| |||||  |   | ||   |||  | | |||  |   || |  |  || | | |   |  ||  |        |||  ||| |    |  |  || |||||       |  
CGGAATCTCCTCCGTCTTCGTGGTTTTTGCATGACACCTACTGAACGGCTGCTTGTTTATCCGTATATGGCTAATGGAAGCGTTGCATCATGTTTAAGAGgtaatgcctgtcaacattccacacttaccagtgacttcttctca-attgctttcacaaggaatttctttttaatttcat----tggtggaattttcttgcctggt--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22491126|gb|BU051049.1|BU051049
EST:     GCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAG                         AGCGCCAGGCATCTGAACCACCTCTTAAATGGGAAACAAGAAGACGGATTG
genomic: GCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAGgttctttatt ... gattccatagAGCGCCAGGCATCTGAACCACCTCTTAAATGGGAAACAAGAAGACGGATTG
EST: gi|19351342|gb|BM895874.1|BM895874
EST:     GCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAG                         AGCGCCAGGCATCTGAACCACCTCTTAAATGGGAAACAAGAAGACGGATTG
genomic: GCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAGgttctttatt ... gattccatagAGCGCCAGGCATCTGAACCACCTCTTAAATGGGAAACAAGAAGACGGATTG
EST: gi|32840243|gb|CD979924.1|CD979924
EST:     GCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAG                         AGCGCCAGGCATCTGAACCACCTCTTAAATGGGAAACAAGAAGACGGATTG
genomic: GCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAGgttctttatt ... gattccatagAGCGCCAGGCATCTGAACCACCTCTTAAATGGGAAACAAGAAGACGGATTG
EST: gi|19272517|gb|BM888773.1|BM888773
EST:     GCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAG                         AGCGCCAGGCATCTGAGCCGCCTCTTAAATGGGAAACAAGAAGACGGATTG
genomic: GCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAGgttctttatt ... gattccatagAGCGCCAGGCATCTGAACCACCTCTTAAATGGGAAACAAGAAGACGGATTG
EST: gi|29130394|gb|CB381098.1|CB381098
EST:     TGGCATCACGTTTACGAG                         AGCGCCAGGCATCTGAACCACCTCTTAAATGGGAAACAAGAAGACGGATTG
genomic: TGGCATCACGTTTACGAGgttctttatt ... gattccatagAGCGCCAGGCATCTGAACCACCTCTTAAATGGGAAACAAGAAGACGGATTG
EST: gi|32840242|gb|CD979923.1|CD979923
EST:     GCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAG                         AGCGCCAGGCATCTGAACCACCTCTTAAATGGGAAACAAGAAGACGGATTG
genomic: GCTGGTCTACCCATACATGGCTAATGGCAGTGTGGCATCACGTTTACGAGgttctttatt ... gattccatagAGCGCCAGGCATCTGAACCACCTCTTAAATGGGAAACAAGAAGACGGATTG