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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATGgtatgtagttcttttttatcatgtttcaatcatagtgcgtgcatgactccagctacattctcttgctctgtcgataaaatgctatggtggatggctgcag...

Basic information

species Zea mays
transcript GRMZM2G149238_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149238_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA03G04500.1 (Glycine max), 5'ss of exon 9
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATGgtatgtagttcttttttatcatgtttcaatcatagtgcgtgcatgactccagctacattctc--ttgctctgtcgataaaatgctatggtggatggctgcag
|||||||| ||||| ||||||||||| |||||||| |||||||||||  | |||||  | |||   || |||||||||| | || | |||    || |  |  |   ||| | |   |   | ||| |  |   ||      | |||  |   |     ||  |  ||   |  | 
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCTGTGCTTACGGAGTTCAGGAAAAACCAACAATGgtatgaatttgtctttacatatttaactttttcagtacata-gtacatacagatgtaacttcaacgattttgtttacccatcagaattataaatacatcaa-

upper sequence: GRMZM2G149238_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA16G25450.3 (Glycine max), 5'ss of exon 9
GTGAGAGAGGAGACCTACACTGCCTTCGAAAACATCTATCCTGTGCTGGCAGAGTTTCGAAAAGTTCAGCAATGgtatgtagttcttttttatcatgtttcaatcatagtgcgtgcatgactccagctacattctcttgctctgtcgataaaatgctatggtggatggctgcag-
|||||||| ||||| ||||||||||| |||||||| ||||| |||||  | |||||  | |||   || |||||||||| |||| | |||    || |  |  |   ||| | | || ||    |  |  |   | |||    |||   | |||  ||       |   |  || 
GTGAGAGATGAGACTTACACTGCCTTTGAAAACATATATCCCGTGCTTACTGAGTTCAGGAAAAACCAACAATGgtatgaagttgtctttgcatatttaactttttcagtacataca-gatgtaatttcaacgattttgtatagtcatcataatcataaaagcattacatttaga