1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AATTCACAAGCATGACAGAAGGAAAGATGGGTTATGAAGACTTTGTTTACTTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATATTGgtaagtggtagctgtgttctgaatagttgtatgtattttttttgtagaactgttccttttttcttaatgtgataagataattccaccttacagtttataa...
species | Zea mays |
transcript | GRMZM2G148323_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATACTG GTTTAAGTGCATCGATCTTGATGGTAATGGTATTTTAACTTTCAATGAAATEST: gi|23199745|gb|BU582310.1|BU582310
genomic: TTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATATTGgtaagtggta ... actttcgcagGTTTAAGTGCATCGATCTTGATGGTAATGGTATTTTAACTTTCAATGAAAT
EST: TTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATACTG GTTTAAGTGCATCGATCTTGATGGTAATGGTATTTTAACTTTCAATGAAATEST: gi|211505069|gb|FK974737.1|FK974737
genomic: TTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATATTGgtaagtggta ... actttcgcagGTTTAAGTGCATCGATCTTGATGGTAATGGTATTTTAACTTTCAATGAAAT
EST: TTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATACTG GTTTAAGTGCATCGATCTTGATGGTAATGGTATTTTAACTTTCAATGAAATEST: gi|26560172|gb|CA832407.1|CA832407
genomic: TTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATATTGgtaagtggta ... actttcgcagGTTTAAGTGCATCGATCTTGATGGTAATGGTATTTTAACTTTCAATGAAAT
EST: TTATATTAATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATACTG GTTTAAGTGCATCGATCTTGATGGTAATGGTATTTTAACTTTCAATGAAAT
genomic: TTATATT-ATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATATTGgtaagtggta ... actttcgcagGTTTAAGTGCATCGATCTTGATGGTAATGGTATTTTAACTTTCAATGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTCACAAGCATGACAGAAGGAAAGATGGGTTATGAAGACTTTGTTTACTTTATATTATCAGAGGAAGACAAATCATCTGAGCCTAGTCTTGAATATTGgtaagtggtagctgtgttctgaatagttgtatgtattttttttgtagaactgttccttttttcttaatgtgataagataattccaccttacagtttataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA