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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcgtaacgtccgttcatcttgagttggtaaactgccttagctatgcatattactgttgtaacctgaaagtctcttggcaagaagacgaaaagc...

Basic information

species Zea mays
transcript GRMZM2G147882_T04
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147882_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g09300.2 (Oryza sativa), 5'ss of exon 9
GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcgtaacgtccgttcatcttgagttggtaaactgccttagctatgcatattactgttgtaacctgaaagtctcttggcaagaagacgaaaagc--------------------------------
|||||||||||||||||||||| ||||||| ||||||||  | || ||||||||| |  | | | |  ||||| |  |   | |    || |    |  |     |||       ||  || |||      || ||  ||||  ||                                
GTCAACCTTACATCGAGTGGTCTTAGATGGACGAGAACGTCATTCTgtaagtttcttctcatacataaatcttca--tacaagatgagctaactcgttaacggcgctgcaagcctctacaaatcttaca--aataaatcgaatggctttaattactccttttccaattcttcaaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78077655|gb|DV506089.1|DV506089
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32925957|gb|CF030769.1|CF030769
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGA
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGA
EST: gi|32926415|gb|CF031227.1|CF031227
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32926466|gb|CF031278.1|CF031278
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|74241069|gb|DT648983.1|DT648983
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32926635|gb|CF031447.1|CF031447
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32926849|gb|CF031661.1|CF031661
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32926430|gb|CF031242.1|CF031242
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32926417|gb|CF031229.1|CF031229
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32925395|gb|CF030207.1|CF030207
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGACCGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|211415426|gb|FL477512.1|FL477512
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|211525267|gb|FL432922.1|FL432922
EST:     GTCCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GT-CAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|71758494|gb|DR956431.1|DR956431
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32926166|gb|CF030978.1|CF030978
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32926025|gb|CF030837.1|CF030837
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|71299018|gb|DR785501.1|DR785501
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCTTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32925152|gb|CF029964.1|CF029964
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCCGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|71429425|gb|DR810475.1|DR810475
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|76287314|gb|DV026882.1|DV026882
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32926219|gb|CF031031.1|CF031031
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|78078283|gb|DV506698.1|DV506698
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCG                         ATAGCTTATTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32858735|gb|CD998416.1|CD998416
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32926072|gb|CF030884.1|CF030884
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32926162|gb|CF030974.1|CF030974
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32926197|gb|CF031009.1|CF031009
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32925587|gb|CF030399.1|CF030399
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32925272|gb|CF030084.1|CF030084
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCCG
EST: gi|32925426|gb|CF030238.1|CF030238
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCT
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCT
EST: gi|32925266|gb|CF030078.1|CF030078
EST:     GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGTTACTCG                         ATAGCCTACTTCGTGGAACCAAGCCACGACTACGTGGTGGAGTGCCTGCC
genomic: GTCAACCTTACATCGAGTGGTCCTAGATGGGCGAGAACGCTACTCGgtaagtttcg ... tcttgaacagATAGCCTACTTCGTGGAACCAAGCCACGACTGCGTGGTGGAGTGCCTGCC