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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctcagtattgtgatgcaatgaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta...

Basic information

species Zea mays
transcript GRMZM2G147671_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147671_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g13970.1 (Oryza sativa), 5'ss of exon 9
CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctcagtattg-tgatgcaatgaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta-
|| ||||||||||| |||||||| || ||||| |||||||||||||||||||||||  | ||||| |||||||| | || | |   | |   |  |    | ||| |   | |  |   |||  ||    | |   ||    ||   | | |  |   || |    ||   
CTCCCTGGTGTTGACCCCAATGACCCCTCTGTGAAAGATTTGCTGGCATCATTGCATGGGCAGGGCGAGgtatgcttttctcta--tccttttagattgttgagtttcaatcaaacttagaaggtctgagtacagttatgacattagactttctattgtccctcgtacctt

upper sequence: GRMZM2G147671_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA02G05250.2 (Glycine max), 5'ss of exon 9
CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctttttt--gggttccagtga--aggtctcagtattgtgatgcaatgaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta-
|||||||| ||||| || ||||| |||||||| |||||||||||||| ||  |||| |  |||   |||||| ||| | ||||  ||     | | |   ||| | |  |   |  |  | ||||  |     ||     |   | |  ||    ||   ||    ||||  | 
CTTCCTGGGGTTGACCCAAATGACCCATCTGTCAAAGATTTGCTGGCTTCCATGCAAAATCAGTCTGAGgtaggttttcttttatggaaaataatcattgggtttgacaaaaatcttttattgaagatttcaatgggggcatgtt-tgacaaaaatcttttt----ttgaagat

upper sequence: GRMZM2G147671_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA16G23590.1 (Glycine max), 5'ss of exon 9
CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttcttttttgggttccagtgaaggtctcagtattgtgatgcaatgaaattcatgttgcctctagactatagcattgttcagcttcaccttgacta---
|||||||| ||||| || |||||||||||||| |||||||||||||| || ||||| |  |||   |||||| ||| | ||||  |    |    |    |     |||  | | |         || || |     |   |||      || |||||||||| || ||   
CTTCCTGGGGTTGACCCAAATGATCCATCTGTCAAAGATTTGCTGGCTTCCTTGCAAAATCAGTCTGAGgtaggttttcttttatg---gaaaataatcattgagtttgaaaagaatctcttagaatatttcacagggggcatatttaaatttagcttcacctagattagcc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5325058|gb|AI783249.1|AI783249
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGNGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|89252647|gb|DY624433.1|DY624433
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|24767864|gb|CA403000.1|CA403000
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGCCAAGTCAGCCAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|9730888|gb|BE509640.1|BE509640
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACCAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|60336789|gb|DN203762.1|DN203762
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|60401369|gb|DN234176.1|DN234176
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|211047090|gb|FL234542.1|FL234542
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|15053742|gb|BI359287.1|BI359287
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|12968898|gb|BG265739.1|BG265739
EST:     TTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: TTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|211047091|gb|FL234543.1|FL234543
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAAAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|32937218|gb|CF042037.1|CF042037
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCGGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|15053743|gb|BI359288.1|BI359288
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|32937848|gb|CF042667.1|CF042667
EST:     ATGATCCCCCTGTTAAAGATTTGCTGGCATCATTGCCCAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGTCAAGTCAGTCAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|60359212|gb|DN226185.1|DN226185
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|4388150|gb|AI491322.1|AI491322
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|22542686|gb|BU093124.1|BU093124
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|28984428|gb|BQ539033.2|BQ539033
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|9733091|gb|BE511843.1|BE511843
EST:     GATCCATCTGTTAAAGATTTGCTGGCATCNATTGCACAGCNCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTG
genomic: GATCCATCTGTTAAAGATTTGCTGGCATC-ATTGCACAGC-CAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTG
EST: gi|76910327|gb|DV163809.1|DV163809
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|5846870|gb|AI999953.1|AI999953
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|60400076|gb|DN232883.1|DN232883
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|211525286|gb|FK977009.1|FK977009
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|37384426|gb|CF629283.1|CF629283
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|78021348|gb|DV489735.1|DV489735
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|211132437|gb|FL443441.1|FL443441
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|33095782|gb|CF055776.1|CF055776
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAGCTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|60352219|gb|DN219192.1|DN219192
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|5770174|gb|AI973348.1|AI973348
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|211525285|gb|FK977008.1|FK977008
EST:     GGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: GGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|37382952|gb|CF628448.1|CF628448
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|60395593|gb|DN228463.1|DN228463
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|5124319|gb|AI746055.1|AI746055
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|15053278|gb|BI358823.1|BI358823
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|9733092|gb|BE511844.1|BE511844
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|166613681|gb|EG279092.1|EG279092
EST:     TCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: TCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|60354976|gb|DN221949.1|DN221949
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|78026924|gb|DV495311.1|DV495311
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|4609687|gb|AI600526.1|AI600526
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
EST: gi|4804535|gb|AI665407.2|AI665407
EST:     ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAG                         CAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA
genomic: ATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 373

CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 410

CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 423

CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 309

CTTCCTGGTGTTGATCCCAATGATCCATCTGTTAAAGATTTGCTGGCATCATTGCACAGCCAGGGAGAGgtatgttctt ... tcttaaacagCAAGAGAAGAAGGAAGACAAGTCAGACAAAACAGAAGACGAGAAGAACTGATGTAGCCATGTTCATGCTTCCAT