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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGACAATAGTTGTGCTGGCCTTCAGTACGCCAAGATGAAGCTTGTGTCTCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttcttttgctagaatcttctgttgatccaccatggtgtagaacgtactgctatcttaatgtgatttagctgatgtctcgattcgtcttttgtgctttacag

Basic information

species Zea mays
transcript GRMZM2G147450_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G147450_T03 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os02g47850.2 (Oryza sativa), 5'ss of exon 10
AACGACAATAGTTGTGCTGGCCTTCAGTACGCCAAGATGAAGCTTGTGTCTCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttcttttgctagaatcttctgttgatccaccatggtgtag-aacgta--ctgctatcttaatgtgatttagctgatgtctcgattc--gtcttttgtgctttacag
||||| ||||| ||||| |||||||||||| | |||||||| ||| ||||||| ||||||||||| ||||| || || || ||||||||||| |||   ||||||||| |||   | | |   | ||  |     |   || ||||  |||  |   ||   | | | ||| |  | | |||| |  | | ||  || | |||||||||||||
AACGATAATAGCTGTGCCGGCCTTCAGTACCCTAAGATGAAACTTTTGTCTCTTCAGTACCATCCAGAGTCCTCACCCGGGCCGCATGATTCTGACTTGGgtacatttccttgaacaatatagtacttctagagaaaagtgttgtaccaacacaacttgtgttatcactgttaagt-gttgattttactaatcctgtttcttgtgctttacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22552626|gb|BU102465.1|BU102465
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|21626214|gb|BQ621135.1|BQ621135
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAACTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|148969715|gb|EE020587.2|EE020587
EST:     TCTCCAGTACCATCCTGAGTTTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|6021531|gb|AW066459.1|AW066459
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|211486296|gb|FL444470.1|FL444470
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         C-TTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|37392466|gb|CF633484.1|CF633484
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGG-AGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|20802593|gb|BQ293643.1|BQ293643
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAACAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|148934461|gb|EC878500.2|EC878500
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|45846984|gb|CN070927.1|CN070927
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGA-GGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|21759933|gb|BQ635474.1|BQ635474
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACCCAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|12973319|gb|BG268421.1|BG268421
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTATATAGAGCTCATGAAGAGC
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGC
EST: gi|20208474|gb|BQ134563.1|BQ134563
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|5670854|gb|AI932117.1|AI932117
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|211122171|gb|FL463027.1|FL463027
EST:     TCTCCAGTACCATCCTGAGTCTTCTCCAGGTCCGCATGATTCCGACACAG                         C-TTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|213169758|gb|FM183377.1|FM183377
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGG-AGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|149102853|gb|EE288195.2|EE288195
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|21759841|gb|BQ635382.1|BQ635382
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         AATACGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|74245055|gb|DT652969.1|DT652969
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
EST: gi|78544147|gb|DV621645.1|DV621645
EST:     TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAG                         CCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG
genomic: TCTCCAGTACCATCCTGAGTCTTCCCCAGGTCCGCATGATTCCGACACAGgtacattttc ... tgctttacagCCTTCGGTGAGTTTATAGAGCTCATGAAGAGCAACAGATTGTGAGGGAGGG