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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGGTTATGATTATGGCTATGCCCCCAGAGGCGGGTACTATGAAGAGCAAGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacataccgacgaccttacatgtcgatgtgggttttgcatcgcattttcccatcttctcatggcttggtggggccttgctggtttaattcacag

Basic information

species Zea mays
transcript GRMZM2G146472_T02
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60398720|gb|DN231536.1|DN231536
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|78027023|gb|DV495410.1|DV495410
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|31363344|gb|CD447701.1|CD447701
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|18180551|gb|BM381761.1|BM381761
EST:     CCCGAGGAATATGCTCCTCCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGNCC
genomic: CCCGAGGAATATGCTCCT-CCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|18649419|gb|BM498238.1|BM498238
EST:     GACGAATACTATGATGAGCCCGA-GAATATGCTCCTCCCCCT-GCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: GACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|5152821|gb|AI759119.1|AI759119
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|19822219|gb|BQ048243.1|BQ048243
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|87153663|gb|DY398452.1|DY398452
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|32866932|gb|CF006614.1|CF006614
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|5124423|gb|AI746159.1|AI746159
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|89755184|gb|DY685709.1|DY685709
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|71756347|gb|DR954284.1|DR954284
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|24773481|gb|CA408735.1|CA408735
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|149010217|gb|EE042036.2|EE042036
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60346152|gb|DN213125.1|DN213125
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60401473|gb|DN234280.1|DN234280
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60343821|gb|DN210794.1|DN210794
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|24773580|gb|CA408834.1|CA408834
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|50334596|gb|CO529722.1|CO529722
EST:     GATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: GATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|18384164|gb|BM417364.1|BM417364
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60345558|gb|DN212531.1|DN212531
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|28987021|gb|CB351425.1|CB351425
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|149101883|gb|EE187954.2|EE187954
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|18180244|gb|BM381454.1|BM381454
EST:     GAATACTATGATGAGCCCGAGGAATATTGCTCCTNNNNNNNTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: GAATACTATGATGAGCCCGAGGAATA-TGCTCCT--CCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|15632650|gb|BI679743.1|BI679743
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|18178578|gb|BM379788.1|BM379788
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60350971|gb|DN217944.1|DN217944
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60352101|gb|DN219074.1|DN219074
EST:     AGACGAATCCTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGGGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|37383692|gb|CF628871.1|CF628871
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|71309709|gb|DR791133.1|DR791133
EST:     CGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: CGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|18179173|gb|BM380383.1|BM380383
EST:     GACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCNCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: GACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCC-CCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60345407|gb|DN212380.1|DN212380
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|5739911|gb|AI947601.1|AI947601
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCCCG                         GACGTGGCAGAGGGAGAAGGGCCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60399599|gb|DN232410.1|DN232410
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|24774111|gb|CA409365.1|CA409365
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGT
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGT
EST: gi|24934802|gb|CA453020.1|CA453020
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCCGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|5439463|gb|AI820384.1|AI820384
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60345737|gb|DN212710.1|DN212710
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60345033|gb|DN212006.1|DN212006
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60394695|gb|DN227565.1|DN227565
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60357376|gb|DN224349.1|DN224349
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|14202293|gb|BG835970.1|BG835970
EST:     AGACGAATACTAYGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCNGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|24961547|gb|CA483556.1|CA483556
EST:     AGACGAATACTATGATGAGTCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTT
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTT
EST: gi|18180803|gb|BM382013.1|BM382013
EST:     GACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCATGGCCGC-                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGC
genomic: GACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCC-TGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGC
EST: gi|60339803|gb|DN206776.1|DN206776
EST:     GCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: GCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60396096|gb|DN228965.1|DN228965
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|18179781|gb|BM380991.1|BM380991
EST:     ACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCNCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: ACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCC-CCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|24773581|gb|CA408835.1|CA408835
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAG
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAG
EST: gi|67033734|gb|CO462483.1|CO462483
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|14245651|gb|BG874233.1|BG874233
EST:     TGAGCCCGAGGAATATGCTCCTCCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGACC
genomic: TGAGCCCGAGGAATATGCTCCT-CCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|211501106|gb|FL128526.1|FL128526
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60355626|gb|DN222599.1|DN222599
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|4621381|gb|AI612214.1|AI612214
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|148939816|gb|EC884518.2|EC884518
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|5608129|gb|AI901796.1|AI901796
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60338207|gb|DN205180.1|DN205180
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|29545026|gb|CB605204.1|CB605204
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60355631|gb|DN222604.1|DN222604
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60344926|gb|DN211899.1|DN211899
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60337039|gb|DN204012.1|DN204012
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|24763920|gb|CA399090.1|CA399090
EST:     AGCCGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAAAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGCCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|18648838|gb|BM497657.1|BM497657
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60350068|gb|DN217041.1|DN217041
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|24773119|gb|CA408373.1|CA408373
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|50334595|gb|CO529721.1|CO529721
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|24773638|gb|CA408892.1|CA408892
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAAAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|15499631|gb|BI596144.1|BI596144
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGNCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|9732335|gb|BE511087.1|BE511087
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60339683|gb|DN206656.1|DN206656
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|5455921|gb|AI833611.1|AI833611
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACNGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGAC-GTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGC
EST: gi|29129866|gb|CB380570.1|CB380570
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
EST: gi|60356279|gb|DN223252.1|DN223252
EST:     AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCG                         GACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC
genomic: AGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 49 (downstream exon)
Score: 243

TACGGTTATGATTATGGCTATGCCCCCAGAGGCGGGTACTATGAAGAGCAAGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCCGCGGGCCACCGCGCGGTGGCCGAGGGAGCTACTACTAGGCGCGAGAAAT


Block sizes: 45 (upstream exon), 43 (downstream exon)
Score: 321

TACGGTTATGATTATGGCTATGCCCCCAGAGGCGGGTACTATGAAGAGCAAGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCCGCGGGCCACCGCGCGGTGGCCGAGGGAGCTACTACTAGGCGCGAGAAAT


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 107

TACGGTTATGATTATGGCTATGCCCCCAGAGGCGGGTACTATGAAGAGCAAGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCCGCGGGCCACCGCGCGGTGGCCGAGGGAGCTACTACTAGGCGCGAGAAAT


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 154

TACGGTTATGATTATGGCTATGCCCCCAGAGGCGGGTACTATGAAGAGCAAGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacata ... taattcacagGACGTGGCAGAGGGAGAAGGGGCGGCATGCCTTGGCGTGGGCGTGGAGGCCGCGGGCCACCGCGCGGTGGCCGAGGGAGCTACTACTAGGCGCGAGAAAT


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TACGGTTATGATTATGGCTATGCCCCCAGAGGCGGGTACTATGAAGAGCAAGACGAATACTATGATGAGCCCGAGGAATATGCTCCTCCCCCTGGCCGCGgtaagacataccgacgaccttacatgtcgatgtgggttttgcatcgcattttcccatcttctcatggcttggtggggccttgctggtttaattcacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC