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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCATTGCGGCAACAAAGATTTGTCCGTGAAGTGACTATACAGTACAATCTGTGCAATGAGCCATGgtacctttctgacctgcattcagagatctcatttgtagtttcacaaggattatgtccaatccttttacctttattgccatttgtgctagctcttgatgcaataggctctttggctactttctggaagtgttctcttgtttagtgttaggatgcttatgctatgacattttgcatttttcag

Basic information

species Zea mays
transcript GRMZM2G146118_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146118_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os07g29450.1 (Oryza sativa), 5'ss of exon 9
AATGCATTGCGGCAACAAAGATTTGTCCGTGAAGTGACTATACAGTACAATCTGTGCAATGAGCCATGgtacctttctgacctgcattcagagat--ctcatttgt-------agtttca-----caaggattatgtccaatccttttacct-ttattgcc-atttgtgctagctcttgatgcaataggctctttggctactttctggaagtgttctcttgtttagtgttagga-tgcttatgctatgacattttgcatt-tttcag
||||| || || |||||||||||||| || ||||| || |||||||||||||| ||||| |||||||||||| ||  |||||| | ||| ||     ||||||||        |||| ||     || | | |    ||  | || || | | | | |||   |||||   ||| ||  |  |   || || || |    |||| |  | || ||   |    ||  |||     | || |   | |  |   || | ||  |||||
AATGCGTTACGTCAACAAAGATTTGTTCGGGAAGTCACAATACAGTACAATCTCTGCAACGAGCCATGgtactttcttgacctaccttctgatgctactcatttgctcatgaaagttccatccagcacgtactgcagccttttctgttgcatatgagtgcttgtttgtttcagcgctcaactcctcag-cttttagaagcctttgtctaggtctttgttgagctaaggttgctcctactaaccttgtacctgattactttacttcag

upper sequence: GRMZM2G146118_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G31960.1 (Glycine max), 5'ss of exon 9
AATGCATTGCGGCAACAAAGATTTGTCCGTGAAGTGACTATACAGTACAATCTGTGCAATGAGCCATGgtacct---ttctgacctgcattcagagatctcatttgtagtttcacaaggattatgtccaatccttttacctttat-tgccatttgtgctagctcttgatgcaataggctctttggctactttctggaagtgttctcttgtttagtgttaggatgcttatgctatgacattttgcatttttcag
|||||||||||||||||||||||||| || ||||| || |||||||||||||| ||||||||||||||||||     || |    |      || ||      |  || ||| | ||  |   || |  ||| |  ||   | || ||   ||||||| |    |   |                                                                                    
AATGCATTGCGGCAACAAAGATTTGTTCGAGAAGTCACAATACAGTACAATCTCTGCAATGAGCCATGgtacgcaagttttttttttggcaaagtgactaatctgatatttttataaacaagttgactgatc-taatattgtaatgtgtgttttgtgcaaagaataatt------------------------------------------------------------------------------------

upper sequence: GRMZM2G146118_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA16G33300.1 (Glycine max), 5'ss of exon 8
AATGCATTGCGGCAACAAAGATTTGTCCGTGAAGTGACTATACAGTACAATCTGTGCAATGAGCCATGgtacctttctgacctgcattcagagatctcatttgtagtttcacaaggattatgtccaatccttttacctttattgccatttgtgctagctcttgatgcaataggctctttggctactttctggaagtgttctcttgtttagtgttaggatgcttatgctatgacattttgcatttttcag
|||||||||||||| ||||||||||| |||||||| || ||||||||||| || |||||||| || |||||   | ||    |  |||   | |   ||   |    | ||  || ||| |||   |   |    |    | |  |  |  | | || |  || |    | |                                                                             
AATGCATTGCGGCAGCAAAGATTTGTACGTGAAGTTACAATACAGTACAACCTCTGCAATGAACCTTGgta---tgctagtattaattggcaaagtacag--gctaatacaatagcattgtgttttaagatggagcagaaaatatc--taatccaagtttgtggtatttttgtaa--------------------------------------------------------------------------

upper sequence: GRMZM2G146118_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA20G35720.1 (Glycine max), 5'ss of exon 8
AATGCATTGCGGCAACAAAGATTTGTCCGTGAAGTGACTATACAGTACAATCTGTGCAATGAGCCATGgtacctttctgacctgcattcagagatctcatttgtagtttcacaaggattatgtccaatccttttacctttattgccatttgtgctagctcttgatgcaataggctctttggctactttctggaagtgttctcttgtttagtgttaggatgcttatgctatgacattttgcatttttcag
|||||||||||||||||||||||||| || ||||| || |||||||||||||| ||||||||||| |||||           ||||            | || |  |||  |  | |   || | ||  ||  ||   | ||     ||||||| |       ||   | |  ||  || | ||  || ||| | | |                                                   
AATGCATTGCGGCAACAAAGATTTGTTCGAGAAGTCACAATACAGTACAATCTCTGCAATGAGCCTTGgta-----------tgca------------agttttttttttccgggaaaagtgactaaatctaatattgtaatatgtgtttgtgcaaa-----aataatagaaactaatttgtta--ttttggtaatat---------------------------------------------------

upper sequence: GRMZM2G146118_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA09G28530.1 (Glycine max), 5'ss of exon 7
AATGCATTGCGGCAACAAAGATTTGTCCGTGAAGTGACTATACAGTACAATCTGTGCAATGAGCCATGgtacctttctgacctgcattcagagatctcatttgtagtttcacaaggattatgtccaatccttttacctttattgccatttgtgctagctcttgatgcaataggctctttggctactttctggaagtgttctcttgtttagtgttaggatgcttatgctatgacattttgcatttttcag
|||||||||||||| ||||||||||| || ||||| || ||||||||||| || |||||||| ||||||||   || |    |  |||   | |   || |  || |   | ||  ||| |||   |   |    |    | |  ||    | | || |  || |    | |                                                                             
AATGCATTGCGGCAGCAAAGATTTGTACGCGAAGTTACAATACAGTACAACCTCTGCAATGAACCATGgtatgcttgta---ttaattggcaaagtacagtc-taatacaataac-attgtgttttaagatggagcagaaaatatca--aatccaagtttgtggtatttttgtaa--------------------------------------------------------------------------

upper sequence: GRMZM2G146118_T01 (Zea mays), 5'ss of exon 8
lower sequence: AT5G08450.3 (Arabidopsis thaliana), 5'ss of exon 9
AATGCATTGCGGCAACAAAGATTTGTCCGTGAAGTGACTATACAGTACAATCTGTGCAATGAGCCATGgtacctttctgacctgcattcagagatctcatttgtagtttcacaaggattatgtccaatccttttacctttattgccatttgtgctagctctt-gatgcaataggctctttggctactttctggaagtgttctcttgtttagtgttaggatgcttatgctatgacattttgcatttttcag
|||||  ||||||||||||| ||||| || ||||| || ||||| |||||||| |||||||| || ||||| || ||||  |   | ||    |   | |    | ||   ||  || | |    |||   |      |  ||| ||  |     || | |  || ||||  | |  |||   ||||| | | |    |   ||||| |   |                                     
AATGCTCTGCGGCAACAAAGGTTTGTACGAGAAGTCACAATACAATACAATCTCTGCAATGAACCTTGgtaactctctg-tcaataatctccaaatacttcaaaaattgttcacagaatttcctaaatttatcagaaatctttgtcacctaaa--agttatcagacgcaagggtcagttt---tacttac-gcatcgatctacttgtctgcag-------------------------------------

upper sequence: GRMZM2G146118_T01 (Zea mays), 5'ss of exon 8
lower sequence: Vv07s0130g00270.t01 (Vitis vinifera), 5'ss of exon 8
AATGCATTGCGGCAACAAAGATTTGTCCGTGAAGTGACTATACAGTACAATCTGTGCAATGAGCCATGgtacctttctgacctgcattcagagatctcatttgtagtttcacaaggattatgtccaatccttttacctttattgccatttgtgctagc-tcttgatgcaataggctctttggctactttctggaagtgttctcttgtttagtgttaggatgcttatgctatgacattttgcatttttcag
||||| |||||||||||||||||||| || ||||| || |||||||||||  | || ||||| || |||||   |||  |  |   ||  |  | || |||  |  ||| |   | |   |    |||  ||  |     || |       ||  ||  | |  |   |||                                                                               
AATGCGTTGCGGCAACAAAGATTTGTACGAGAAGTCACAATACAGTACAACTTATGTAATGAACCTTGgtatgcttcaaattt--ctttgggtagcttattgctcctttaattcgtaa-gtagagaatttttggaagcaaatggaaggcattgagagtgtttccaccaaat-------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60397960|gb|DN230776.1|DN230776
EST:     AGATTTGTCCGTGAAGTGACTATACAGTACAATCTGTGCAATGAGCCATG                         GTTGAAATATAGTATAAACATTGTGGCAGATAAGGGATTGAAAAAGTCTCT
genomic: AGATTTGTCCGTGAAGTGACTATACAGTACAATCTGTGCAATGAGCCATGgtacctttct ... catttttcagGTTGAAATATAGTATAAACATTGTGGCAGATAAGGGATTGAAAAAGTCTCT