1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
ATCAGTTATTCAACCTGCTGCGATGCAGATTTGGCAGTGGATGAACATTTACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatcttgccgctattattttcgaacttccatgaagcgtggttaaccaataaattctcctccacttaagcgagttcatttcactatattaacttga...
species | Zea mays |
transcript | GRMZM2G142502_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAA GATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAAEST: gi|22546253|gb|BU098564.1|BU098564
genomic: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatct ... tattttgcagGATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAA
EST: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAA GATGGAAAGAAGCAATEST: gi|211191423|gb|FL472420.1|FL472420
genomic: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatct ... tattttgcagGATGGAAAGAAGCAAT
EST: ACAATGCACCATGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAA GATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAAEST: gi|60353959|gb|DN220932.1|DN220932
genomic: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatct ... tattttgcagGATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAA
EST: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAA GATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAAEST: gi|110517035|gb|EE021622.1|EE021622
genomic: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatct ... tattttgcagGATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAA
EST: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAA GATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAAEST: gi|149079391|gb|EE168366.2|EE168366
genomic: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatct ... tattttgcagGATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAA
EST: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTTTCAAA GATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAAEST: gi|28361590|gb|CB239946.1|CB239946
genomic: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatct ... tattttgcagGATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAA
EST: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAA GATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAAEST: gi|87157166|gb|DY401955.1|DY401955
genomic: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatct ... tattttgcagGATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAA
EST: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAA GATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAAEST: gi|28390376|gb|CB250185.1|CB250185
genomic: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatct ... tattttgcagGATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAA
EST: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAA GATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAAEST: gi|211359371|gb|FL212472.1|FL212472
genomic: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatct ... tattttgcagGATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAA
EST: ACAATGCACCATGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAA GATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAA
genomic: ACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatct ... tattttgcagGATGGAAAGAAGCAATAGCCGCCGATCACGTGAAACTTGTTGTGTCCTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCAGTTATTCAACCTGCTGCGATGCAGATTTGGCAGTGGATGAACATTTACAATGCACCACGTTTTCCAGTGAAGAAGCGACAGCCTTTCTTTCTCAAAgtaaacatcttgccgctattattttcgaacttccatgaagcgtggttaaccaataaattctcctccacttaagcgagttcatttcactatattaacttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC