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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCATAGATTTTCTCGATAAGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccagacagataagctaccttagctcctagtacttgttttcaatgaacaatttcaagtttgaaaagaataaggtttcttataaatgattcttggatttttaatggcccgacacatgaataattgtag

Basic information

species Zea mays
transcript GRMZM2G141903_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141903_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g55389.1 (Oryza sativa), 5'ss of exon 9
GCCATAGATTTTCTCGATAAGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccagacagataagctaccttagctcctagtacttgtt---ttcaatgaacaatttcaagtttgaaaagaataaggtttcttataaatgattcttggatttttaatggcccgacacatgaataattgtag
||  |||||||||| |||||||| || || |||||||||||||| ||||| |||||||| |||||||||||||| |            ||||    |   || || |||||   ||| | |||  ||    | ||||         |  |||| |||  |||    |   | | || |  |  |                   
GCTGTAGATTTTCTTGATAAGCTTCTACGTTATGATCACCAAGATAGGCTCACTGCACGTGAAGCTATGgtaagtc------------taccccgacagataatatttgttacattccaagaa-gatactgattttgtttgactggatatttcctatttatg----taacagtattgactgttcac-----------------

upper sequence: GRMZM2G141903_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S165_107V6.1 (Physcomitrella patens), 5'ss of exon 9
GCCATAGATTTTCTCGATAAGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaag---ccagacagataagctac---cttagctcctagtacttgtttt-caatgaacaa---tttcaagtttgaaaagaataaggtttcttataaatgatt--cttggatttttaatggcccgacacatgaataattgtag
||  |||||||  | || ||||| ||||| ||||| || ||||| |||||||||||  |||||||||||||| |   | |  |   || | | |   ||     |  || | || |||  | ||| ||     ||   |  ||||    |||  | |   | ||| |||     ||| | | | | ||   | ||   |||    |||  ||
GCAGTAGATTTCTTGGACAAGCTTCTGCGGTATGACCATCAAGAAAGGCTTACTGCCAGGGAAGCTATGgtatgtttctattcccttatgttgcaagctggttacaaagcagttctttcacgatgtacggattttctcaaattgatccaaattcgttgagtcatacatgtcgagcttagttgtgtgatt-tctgatttatgtcgtatttcag

upper sequence: GRMZM2G141903_T01 (Zea mays), 5'ss of exon 9
lower sequence: PP1S165_119V6.2 (Physcomitrella patens), 5'ss of exon 10
GCCATAGATTTTCTCGATAAGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccagacagataagctacct---------tagctccta--gtacttgttttca-atgaacaatttcaagtttgaaaagaataaggtttcttataaatgattcttggat--ttttaatg-gcccgacacatgaataattgtag-------------
||  | |||||| | |||||||| || ||||| ||||| ||||||||||| |||||   ||||||||||||| |      |  || | |             ||| |  ||  ||   |      | |||   |    |   | | |   ||  |||  |   | |||| |  |   | ||  || |  ||  | | |  | |  ||  ||| |              
GCTGTGGATTTTTTGGATAAGCTTCTACGCTACGATCATCAAGACAGGCTGACTGCGAAGGAAGCTATGgtatgtatttgacgtaggttgtacagtgtagaataggttgtacagtgactacaagtatatgtggagcgccccatgtcatttgaccaagactaggtctaaagggatgccgtatgtttctgttgtactctattccttgatttttggattctgtttctgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6012561|gb|AW061998.1|AW061998
EST:     AGCTCCTGCGCTATGATCNCCAAGACAGGCTTACTGCCCGGGAAGCTATG                         GCCCATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|149107620|gb|EE189502.2|EE189502
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|18964717|gb|BM661166.1|BM661166
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTACCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|78027572|gb|DV495959.1|DV495959
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|76925598|gb|DV170499.1|DV170499
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|60353291|gb|DN220264.1|DN220264
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|33096843|gb|CF056803.1|CF056803
EST:     CACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: CACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|87152871|gb|DY397660.1|DY397660
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|5895649|gb|AW036895.1|AW036895
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|17970089|gb|BM276855.1|BM276855
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|60344732|gb|DN211705.1|DN211705
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATTCCCTACTTCCTTCA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACAT-CCCTACTTCCTTCA
EST: gi|24769466|gb|CA404595.1|CA404595
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|60394565|gb|DN227435.1|DN227435
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|5819188|gb|AI987394.1|AI987394
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|5714067|gb|AI944052.1|AI944052
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|38568894|gb|CF974779.1|CF974779
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|5762096|gb|AI967144.1|AI967144
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|78021390|gb|DV489777.1|DV489777
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
EST: gi|60399542|gb|DN232353.1|DN232353
EST:     AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATG                         GCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA
genomic: AGCTCCTGCGCTATGATCACCAAGACAGGCTTACTGCACGGGAAGCTATGgtaagccaga ... ataattgtagGCACATCCCTACTTCCTTCAAGTCAGAGCTGTGGAGAACAGTAGGACGAGA