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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTTCTTTCCACGTGAAGTTGTGAAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGgcaggtacccttgccatatccatcaaatttcggactgtcctacttttttgtgttaaaaatgtcagttccaacatacccatgcttgaagatttaatgtttcag

Basic information

species Zea mays
transcript GRMZM2G141873_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G141873_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g02120.1 (Oryza sativa), 5'ss of exon 9
TGTTTCTTTCCACGTGAAGTTGTGAAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGgcaggtacccttgccatatccatcaaatttcggactgtcctacttttttgtgttaaaaatgtcagttccaacatacccatgcttgaagatttaatgtttcag
|| ||||| ||| |||||||||| ||| ||||  ||| |||||| || |||||||||||||| |||||||| ||||||||| ||||   || |||| ||       ||  || || |  | |||||| |||| | |||||  |||       || ||| || |||     ||||||
TGCTTCTTCCCAAGTGAAGTTGTAAAGGACATCATCACCCCAGTATTTGTTCTTAATCCAGCGTATGATGCTTGGCAGgtatcctt---atttccacca----ctaga--gttctccagtgttgtgt-aaaactatcagtgtcaaa-----tattcttaaaaattcc-catttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71417999|gb|DR804277.1|DR804277
EST:     AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGGCAG                      
genomic: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCT----Ggcaggtaccc ... aatgttt
EST: gi|149011848|gb|EE042455.2|EE042455
EST:     AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTG                         GTACAACATGCGTTGGCTCCAGAAGCATCTGACCCTCAACATTCATGGCTG
genomic: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGgcaggtaccc ... aatgtttcagGTACAACATGCGTTGGCTCCAGAAGCATCTGACCCTCAACATTCATGGCTG
EST: gi|71423226|gb|DR805987.1|DR805987
EST:     AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGGCAG                      
genomic: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCT----Ggcaggtaccc ... aatgttt
EST: gi|78087078|gb|DV515471.1|DV515471
EST:     AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCTGGCAG                      
genomic: AAGCACATTGTCAACCCAGTTTTCGTTCTTAATCCAGCATATGATGCCT----Ggcaggtaccc ... aatgttt