1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
TGTGGCAAAAAAACAGGATTTGTTTTCTGCATACAAATTAACGGACGAGGACAAAGCAGAGATTGAGAAGTTGTCAAAGGATCCAAGGATTGGAGAAAGGgtttgttactcaactctttaatctcttgatgaaaatgtgttaagctaatatacgctaacttaagcacctaactcaacag
species | Zea mays |
transcript | GRMZM2G139894_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGGATTGGAGAAAGG ATTATCAAATCAATTGCACCATCCATTTACGGGCATGAAGATATCAAGACTEST: gi|211351168|gb|FL066628.1|FL066628
genomic: AAGGATTGGAGAAAGGgtttgttact ... aactcaacagATTATCAAATCAATTGCACCATCCATTTACGGGCATGAAGATATCAAGACT
EST: ACAAAGCAGAGATTGAGAAGTTGTCAAAGGATCCAAGGATTGGAGAAAGG ATTATCAAATCAATTGCACCATCCATTTATGGGCATGAAGATATCAAGACTEST: gi|211351172|gb|FL066632.1|FL066632
genomic: ACAAAGCAGAGATTGAGAAGTTGTCAAAGGATCCAAGGATTGGAGAAAGGgtttgttact ... aactcaacagATTATCAAATCAATTGCACCATCCATTTACGGGCATGAAGATATCAAGACT
EST: ACAAAGCAGAGATTGAGAAGTTGTCAAAGGATCCAAGGATTGGAGAAAGG ATTATCAAATCAATTGCACCATCCATTTATGGGCATGAAGATATCAAGACTEST: gi|29544433|gb|CB604813.1|CB604813
genomic: ACAAAGCAGAGATTGAGAAGTTGTCAAAGGATCCAAGGATTGGAGAAAGGgtttgttact ... aactcaacagATTATCAAATCAATTGCACCATCCATTTACGGGCATGAAGATATCAAGACT
EST: AAAGGATCCAAGGATTGGAGAAAGG ATTATCAAATCAATTGCACCATCCATTTACGGGCATGAAGATATCAAGACT
genomic: AAAGGATCCAAGGATTGGAGAAAGGgtttgttact ... aactcaacagATTATCAAATCAATTGCACCATCCATTTACGGGCATGAAGATATCAAGACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGCAAAAAAACAGGATTTGTTTTCTGCATACAAATTAACGGACGAGGACAAAGCAGAGATTGAGAAGTTGTCAAAGGATCCAAGGATTGGAGAAAGGgtttgttactcaactctttaatctcttgatgaaaatgtgttaagctaatatacgctaacttaagcacctaactcaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA