1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTCACTCTAGATGGAGAATTTGGTGTTTTGCGGCAACTTGAGCATTTGCTAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAAgtatgctaaaattcacagctgtctggtctctatctacttctgttccatgtatatagtggcaataccgataagatgcaaaaaacctatagtttgactcgttttcttttaccttttgttacag
species | Zea mays |
transcript | GRMZM2G139360_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAA GATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTGEST: gi|86471567|gb|DY237937.1|DY237937
genomic: TAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAAgtatgctaaa ... tttgttacagGATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTG
EST: TAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAA GATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTGEST: gi|60401595|gb|DN234402.1|DN234402
genomic: TAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAAgtatgctaaa ... tttgttacagGATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTG
EST: TAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAA GATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTGEST: gi|60394870|gb|DN227739.1|DN227739
genomic: TAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAAgtatgctaaa ... tttgttacagGATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTG
EST: TAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAA GATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTGEST: gi|71756772|gb|DR954709.1|DR954709
genomic: TAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAAgtatgctaaa ... tttgttacagGATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTG
EST: TAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAA GATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTG
genomic: TAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAAgtatgctaaa ... tttgttacagGATCTACTCCAAGAATCAGGTGCGACTGATGCATCAGGAAATGTGATATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCACTCTAGATGGAGAATTTGGTGTTTTGCGGCAACTTGAGCATTTGCTAAAGAGTAAGGGATTTTGTGTGGTTTGTGTTGCAGAAGCTGCTGGACAAgtatgctaaaattcacagctgtctggtctctatctacttctgttccatgtatatagtggcaataccgataagatgcaaaaaacctatagtttgactcgttttcttttaccttttgttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA