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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAACTATATGAAGCTTTTCTAAATAGTGAGCTGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACAgtaagaataatcttcaaagccttttcttcataatggtgtattgaccttcctttgcctttagggctgggctgttgcttggccttatagaaaagtttgctgt...

Basic information

species Zea mays
transcript GRMZM2G138125_T02
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211389135|gb|FL355235.1|FL355235
EST:     TGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACA                         ATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
genomic: TGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACAgtaagaataa ... tctccaacagATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
EST: gi|67035224|gb|CO463757.1|CO463757
EST:     TGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACA                         ATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
genomic: TGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACAgtaagaataa ... tctccaacagATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
EST: gi|28987103|gb|CB351465.1|CB351465
EST:     GCAGCCAAAGGCATCACCGTTGGCTGCAATCACA                         ATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
genomic: GCAGCCAAAGGCATCACCGTTGGCTGCAATCACAgtaagaataa ... tctccaacagATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
EST: gi|211102981|gb|FL307628.1|FL307628
EST:     TGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACA                         ATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
genomic: TGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACAgtaagaataa ... tctccaacagATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
EST: gi|31909131|gb|CD650765.1|CD650765
EST:     CAGCCAAAGGCATCACCGTTGGCTGCAATCACA                         ATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
genomic: CAGCCAAAGGCATCACCGTTGGCTGCAATCACAgtaagaataa ... tctccaacagATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
EST: gi|28930971|gb|CB334332.1|CB334332
EST:     TGCAGCCAAAGGCATCACCGTTGGCTGCAATCACA                         ATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
genomic: TGCAGCCAAAGGCATCACCGTTGGCTGCAATCACAgtaagaataa ... tctccaacagATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
EST: gi|32931646|gb|CF036458.1|CF036458
EST:     TGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACA                         ATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT
genomic: TGGTTCATTTAGCATTGCAGCCAAAGGCATCACCGTTGGCTGCAATCACAgtaagaataa ... tctccaacagATATTGAAGAAAATATGTGATCATCCACTGCTATTAACTAAGAAAGGTGCT