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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAACTACAGGCTAAAAAGGATCAATTGAGAATCTGGACAGGGTTCAAGCCACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtcttacattctccgatgacagtgtgtattcatcatgttcacataattgtatgatagtaactattttttttccatgttgatctcttcgcag

Basic information

species Zea mays
transcript GRMZM2G136296_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G136296_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g32350.2 (Oryza sativa), 5'ss of exon 8
AGAACTACAGGCTAAAAAGGATCAATTGAGAATCTGGACAGGGTTCAAGCCACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtcttacattctccgatgacagtgtgtattcatcatgttcacataattgtatgatagtaactattttttttccatgttgatctcttcgcag
 || || |||||||| ||||| || |||||||| |||||||| || |||||||| ||||||||||||||||| || || ||||||||||| |||||||||||| ||      |||||  | |     |||||||||        |||| ||  |  ||| | | ||| |||  ||   ||||||||  |||  ||
TGAGCTTCAGGCTAAGAAGGACCAGTTGAGAATTTGGACAGGATTTAAGCCACCAGTGACAAACTCGAAGCCAATCCACGACCAGAAATTCACTGGAAAAgtgggttccctgttctcacaagta---gtgtattca--------acatgatcatgcgattgaagctaatttgcttt-gtgttgatcctttcatag

upper sequence: GRMZM2G136296_T03 (Zea mays), 5'ss of exon 9
lower sequence: Vv00s0283g00020.t01 (Vitis vinifera), 5'ss of exon 9
AGAACTACAGGCTAAAAAGGATCAATTGAGAATCTGGACAGGGTTCAAGCCACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtcttacattctc-cgatgacagtgtgtattc-atcatgttcacat--aattgtatgatagtaactattttttttccatgttgatctcttcgcag
|||||| || || || ||| ||| ||||||| ||||||||   |     || ||    ||||| |||||| | ||||| |||||||| ||||||||||||||| ||  |   |   |   |||     ||  || | ||| | |  | ||  |||| ||   || |   ||| |   |  ||| |||  || ||     
AGAACTTCAAGCGAAGAAGAATCGATTGAGATTCTGGACAAACTATGTTCCCCCACCCACAAATTCGAAGGCAATTCACGACCAGAATTTTACTGGAAAAgtgggtagttggtcaacataatgcttacgtaaatcctatcttttataaatggaattttaccctaatt-ttatgtccatctcat-ttggcctttttag--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18384788|gb|BM417987.1|BM417987
EST:     CACCTGTGACAAACTCGAAGCCCATCCATGACCAGAAATTTACTGGAAAA                         GTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
genomic: CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtctta ... ctcttcgcagGTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
EST: gi|16746003|gb|BM032433.1|BM032433
EST:     CACCTGTGACAAACTCGAAGCCCATCCATGACCAGAAATTTACTGGAAAA                         GTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
genomic: CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtctta ... ctcttcgcagGTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
EST: gi|21390058|gb|BQ528107.1|BQ528107
EST:     CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAA                         GTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
genomic: CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtctta ... ctcttcgcagGTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
EST: gi|18385299|gb|BM418498.1|BM418498
EST:     CACCTGTGACAAACTCGAAGCCCATCCATGACCAGAAATTTACTGGAAAA                         GTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
genomic: CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtctta ... ctcttcgcagGTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
EST: gi|13150309|gb|BG320631.1|BG320631
EST:     CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAA                         GTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
genomic: CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtctta ... ctcttcgcagGTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
EST: gi|22489141|gb|BU049064.1|BU049064
EST:     CACCTGTGACAAACTCGAAGCCCATCCATGACCAGAAATTTACTGGAAAA                         GTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
genomic: CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtctta ... ctcttcgcagGTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
EST: gi|32845626|gb|CD985307.1|CD985307
EST:     CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAA                         GTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
genomic: CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtctta ... ctcttcgcagGTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
EST: gi|18384789|gb|BM417988.1|BM417988
EST:     CACCTGTGACAAACTCGAAGCCCATCCATGACCAGAAATTTACTGGAAAA                         GTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
genomic: CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtctta ... ctcttcgcagGTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
EST: gi|88758397|gb|DY542766.1|DY542766
EST:     CACCTGTGACAAACTCGAAGCCCATCCATGACCAGAAATTTACTGGAAAA                         GTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT
genomic: CACCTGTGACAAACTCGAAGCCCATTCATGACCAGAAATTTACTGGAAAAgtgtgtctta ... ctcttcgcagGTGGTAGAGGTTGTAAGTGGGGATTGCATTATTGTGGCTGATGATTCTGCT