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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTCAAACTGAGCAACCACCTCCTTCTGCATTTCTTCTACTGAGTCCAGGAGAAATGAGTGGTTTCAGATTCATGACTATATCAGTAGCACCTCGACCGgtattctcttgtgctattcttgtcttgtgctagaatatttatttcccaattaaaaggtcttataagtttgcaagtaaaattttaggacaatggtatgtcc...

Basic information

species Zea mays
transcript GRMZM2G135256_T03
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G135256_T01 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os09g09360.1 (Oryza sativa), 5'ss of exon 9
CAGTCAAACTGAGCAACCACCTCCTTCTGCATTTCTTCTACTGAGTCCAGGAGAAATGAGTGGTTTCAGATTCATGACTATATCAGTAGCACCTCGACCGgtattctcttgtgctattcttgtcttgtgctagaatatt---tatttcccaattaaaaggtcttataagtttgcaagtaa---aattttaggacaatggtatgtcc
 |||||||| ||||||||||||||| ||||||||||||| || ||||||| |||||||||||||||| | ||||||||||| ||||| |||||||||||||||||| ||||| | |||| ||| || |  ||   | ||    |   ||| |||    | |||| |   | | || |      ||  ||  |   |  ||||    
GAGTCAAACCGAGCAACCACCTCCTACTGCATTTCTTCTGCTTAGTCCAGAAGAAATGAGTGGTTTCCGCTTCATGACTATCTCAGTGGCACCTCGACCGgtattcccttgtaccattcctgttttcttgtaattttttgcacaaacccctattgt--gttcttgtgcttcttcatgcgcatcaacctttaggtgacagtat----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78110849|gb|DV529247.1|DV529247
EST:     GAGAAATGAGTGGTTTCAGATTCATGACTATATCAGTAGCACCTCGACCG                         ACAATTTCAGGTAGGCCTCCCCCAGCAGCCTCTATGGCAGTGGGGCAGTTC
genomic: GAGAAATGAGTGGTTTCAGATTCATGACTATATCAGTAGCACCTCGACCGgtattctctt ... tggcatacagACAATTTCAGGTAGGCCTCCCCCAGCAGCCTCTATGGCAGTGGGGCAGTTC
EST: gi|71769162|gb|DR967099.1|DR967099
EST:     GAGAAATGAGTGGTTTCAGATTCATGACTATATCAGTAGCACCTCGACCG                         ACAATTTCAGGTAGGCCTCCCCCAGCAGCCTCTATGGCAGTGGGGCAGTTC
genomic: GAGAAATGAGTGGTTTCAGATTCATGACTATATCAGTAGCACCTCGACCGgtattctctt ... tggcatacagACAATTTCAGGTAGGCCTCCCCCAGCAGCCTCTATGGCAGTGGGGCAGTTC