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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATCCTTTCCGAACGAAATGCAATCGTCCCCAATGTGGAGCAGAAAAGCCATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgtttcagaaccttcactatggtcctcaacattttctacacctttatttagaacattaagttgcatgccttattaatatatcactactatttttaatcatttccttgccctcatgtttgcttgacatagcttaataaattatgtccttactgttacag

Basic information

species Zea mays
transcript GRMZM2G134770_T04
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5005812|gb|AI711874.1|AI711874
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|71428348|gb|DR809398.1|DR809398
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|89248611|gb|DY620397.1|DY620397
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|6994049|gb|AW453263.1|AW453263
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|12970927|gb|BG267228.1|BG267228
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|32943442|gb|CF048261.1|CF048261
EST:     CATCACAGACGAACAATGCAAATGAATCNGAGGGAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|28910525|gb|CB331482.1|CB331482
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|94474683|gb|EB703641.1|EB703641
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|6952762|gb|AW424845.1|AW424845
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|78112738|gb|DV531132.1|DV531132
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|33097662|gb|CF057622.1|CF057622
EST:     GAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCGGCGTCGTCGTCAAG
genomic: GAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|76909152|gb|DV163248.1|DV163248
EST:     CTTCACAGGCGAACAATGCAAATGAATCAGCGGAAGATCGGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|211500849|gb|FL455460.1|FL455460
EST:     ATCACAGACGGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: ATCACAGAC-GAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|74243768|gb|DT651682.1|DT651682
EST:     CATCACAGCCGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|88752563|gb|DY536704.1|DY536704
EST:     CATCCCAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGGGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|211158909|gb|FK993540.1|FK993540
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCATCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|78026571|gb|DV494958.1|DV494958
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|31350190|gb|CD434547.1|CD434547
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCATCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|71762425|gb|DR960362.1|DR960362
EST:     TCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: TCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
EST: gi|89247194|gb|DY618980.1|DY618980
EST:     CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAG                         TGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG
genomic: CATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgttt ... actgttacagTGAGTCCTAGAACAGTAATGAGGGTCAAGAAGGTCCAGCGTCGTCGTCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATCCTTTCCGAACGAAATGCAATCGTCCCCAATGTGGAGCAGAAAAGCCATCACAGACGAACAATGCAAATGAATCAGCGGAAGATCAGGACAATCAGgtctttgtttcagaaccttcactatggtcctcaacattttctacacctttatttagaacattaagttgcatgccttattaatatatcactactatttttaatcatttccttgccctcatgtttgcttgacatagcttaataaattatgtccttactgttacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA