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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagcttaattttttttttgcctttatggaacagtttctttcttggattttttaaaatgattttatggttccatacaaggccttatctcatatgata...

Basic information

species Zea mays
transcript GRMZM2G133749_T01
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71758651|gb|DR956588.1|DR956588
EST:     CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAA                         GTTGTACAGATCAGCTGATACTATTAATCAAAGAATACATTTTGATATTGA
genomic: CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagctt ... ccataataagGTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
EST: gi|78110506|gb|DV528916.1|DV528916
EST:     CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAA                         GTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
genomic: CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagctt ... ccataataagGTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
EST: gi|78110507|gb|DV528917.1|DV528917
EST:     CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAA                         GTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
genomic: CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagctt ... ccataataagGTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
EST: gi|78120249|gb|DV538633.1|DV538633
EST:     CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAA                         GTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
genomic: CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagctt ... ccataataagGTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
EST: gi|60355334|gb|DN222307.1|DN222307
EST:     CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAA                         GTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
genomic: CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagctt ... ccataataagGTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
EST: gi|76287081|gb|DV026649.1|DV026649
EST:     CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAA                         GTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
genomic: CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagctt ... ccataataagGTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
EST: gi|5932732|gb|AW057093.1|AW057093
EST:     CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAA                         GTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
genomic: CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagctt ... ccataataagGTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
EST: gi|31664125|gb|CD573305.1|CD573305
EST:     CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAA                         GTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
genomic: CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagctt ... ccataataagGTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
EST: gi|213186763|gb|FM190552.1|FM190552
EST:     CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAA                         GTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
genomic: CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagctt ... ccataataagGTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
EST: gi|60349571|gb|DN216544.1|DN216544
EST:     CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAA                         GTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
genomic: CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagctt ... ccataataagGTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
EST: gi|93283432|gb|EB675696.1|EB675696
EST:     CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAA                         GTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA
genomic: CCGTACATATTATGTTGGGATATTCGCAATACTGTGGACATTGTTTACAAgtaagagctt ... ccataataagGTTGTACAGATCAGCTGATACTACTAATCAAAGAATACATTTTGATATTGA