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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGCAAGGATATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAGgtactaagatcttcattccaaatgaatttattctgtttaaaaaatatatacttcaagtataaatgtctttgtctcgttgtgccgcctgacacttaactacag

Basic information

species Zea mays
transcript GRMZM2G132084_T04
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132084_T04 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g46410.1 (Oryza sativa), 5'ss of exon 8
GTGGCAAGGATATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAGgtactaagatcttcattccaaatgaatttat------tctgtttaaaaaatatatactt-caagtataaatgtctttgtctcgttgtgccgcctgacacttaactacag------------------
|| ||||||||| || ||||||| || ||||| || ||||| |||||||| |||||||||||| ||| || | |||| |  ||| ||||||      | | ||  |      | |  ||  | ||| ||||     |   ||  | |||   || |||| |   ||| |                  
GTTGCAAGGATACTTCTGTTCATTTACGTATTCTATCACATCTATTTGCACTACAGTCAGgtaataacatatccattgctgatgcatttatggactctttattctattttattgtgtttatatgtacaaatacacataa-tctctatgctatctaacacattcttactgttctatcttcttatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78076716|gb|DV505150.1|DV505150
EST:     TATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATCG
genomic: TATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATCG
EST: gi|211111684|gb|FL466622.1|FL466622
EST:     TATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAG                         ATAATGCAGATGCATGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATCG
genomic: TATTTTTGTTCATGTATGTATTTTACCACATTTATTTGCATTACAGTCAGgtactaagat ... ttaactacagATAATGCAGATGCATGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATCG
EST: gi|166657559|gb|EG291616.1|EG291616
EST:     TTTATTTGCATTACAGTCAG                         ATAATGCAGATGCATAGCCTTTGGGTACTACCTGACGTTTGTTGTGCCATC
genomic: TTTATTTGCATTACAGTCAGgtactaagat ... ttaactacagATAATGCAGATGCAT-GCCTTTGGGTACTACCTGACGTTTGTTGTGCCATC