1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGATCTCATCGCGAAAAGCATGAATTCCGTGGACACCCAGGATGCTTCGGGAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcgtggtccagatctccgtttccttgtcgattagctctactatcatagccggatgattccccatccccattaggctttattcgtttacaccaa...
species | Zea mays |
transcript | GRMZM2G132069_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACEST: gi|74235449|gb|DT643363.1|DT643363
genomic: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcg ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
EST: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACEST: gi|45847889|gb|CN071832.1|CN071832
genomic: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcg ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
EST: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACEST: gi|78076659|gb|DV505093.1|DV505093
genomic: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcg ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
EST: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACEST: gi|78023653|gb|DV492040.1|DV492040
genomic: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcg ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
EST: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACEST: gi|78088953|gb|DV517346.1|DV517346
genomic: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcg ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
EST: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACEST: gi|74233713|gb|DT641627.1|DT641627
genomic: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcg ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
EST: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACEST: gi|15082833|gb|BI389517.1|BI389517
genomic: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcg ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
EST: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACEST: gi|6021914|gb|AW066842.1|AW066842
genomic: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcg ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
EST: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACEST: gi|71315899|gb|DR794637.1|DR794637
genomic: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcg ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
EST: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGACEST: gi|89248830|gb|DY620616.1|DY620616
genomic: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcg ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
EST: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAG GATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
genomic: GAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcg ... tgacatgcagGATCATTTCAAGAAGAAGCCCCGTTTCCCGATAACTCTCAAGTACATCGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCTCATCGCGAAAAGCATGAATTCCGTGGACACCCAGGATGCTTCGGGAAATAAGCTGCTTCTGGATGTTGGCCTCTGGCTATCCCAGAAGATAAAGgtcaggctcgtggtccagatctccgtttccttgtcgattagctctactatcatagccggatgattccccatccccattaggctttattcgtttacaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccccatcc