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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATCCCCAACTGAAGATCCCAGGTCTAAATGCCCCAATCCCCCCTGGTGCCAGTTTTGGTTATAGACCAGGGGAGTGGGGAAAGCCACCAGTTGATGAGgtatgttttctattgaaacctcgctttgacactgtctagatgtactcaaggttcctttcatgagctcttgtattgttccttgccaacag

Basic information

species Zea mays
transcript GRMZM2G132060_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G132060_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G07760.1 (Glycine max), 5'ss of exon 10
TTATCCCCAACTGAAGATCCCAGGTCTAAATGCCCCAATCCCCCCTGGTGCCAGTTTTGGTTATAGACCAGGGGAGTGGGGAAAGCCACCAGTTGATGAGgtatgttttctattgaaacctcgctttgacactgtc--tagatgtactcaaggttcctt--tcatgagctcttgtattgttc---cttgccaacag----------------
 ||||| || ||||||||||| || || ||||| |||||||||||||| || || |||||||||   || || |  ||||| ||||| || |||||||| |||    || | |  | |       || |   | ||  |   | |  | ||  ||  |   ||    |||||| |||    |   | ||   ||                  
ATATCCTCATCTGAAGATCCCTGGACTGAATGCTCCAATCCCCCCTGGAGCTAGCTTTGGTTATCATCCTGGTGGATGGGGGAAGCCTCCTGTTGATGAAgtagaaattttttacatattcactgtttattttatcatttattattttaaaaattgataggtctctggctcttttatctcactgacatgtttacttgtcttcacgcgaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51592523|gb|CV071669.1|CV071669
EST:     CCAGTTTTGGTTATAGACCAGGGGAGTGGGGAAAGCCACCAGTTGATGAG                         CACGGACNTCCACTCTATGGAGACGTTTTTGGTGTTCTGCAGCAGGACGAA
genomic: CCAGTTTTGGTTATAGACCAGGGGAGTGGGGAAAGCCACCAGTTGATGAGgtatgttttc ... ttgccaacagCATGGACGTCCACTCTATGGAGACGTTTTTGGTGTTCTGCAGCAGGACGAA