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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGAACTCTTAGGACCAAATGAAACAGATGATAGCAGCCTAGCCATTACAGATATATGTCCGAGTAATGATGGCTCATTGGTTGCTGTAGCTATTCAAAGgttagcttgacttgtggggcaatgtatctccaagaaagtgatagtatttattgtgttctaacattgtcctactttttcactctgcag

Basic information

species Zea mays
transcript GRMZM2G131998_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131998_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g53530.1 (Oryza sativa), 5'ss of exon 8
CAGAACTCTTAGGACCAAATGAAACAGATGATAGCAGCCTAGCCATTACAGATATATGTCCGAGTAATGATGGCTCATTGGTTGCTGTAGCTATTCAAAGgttagcttgacttgtggggcaatgtatctccaagaaagtgatagtatttattgtgttctaacattgtcctactttttcactctgcag---
 |||||||||||  ||||||||||| || || | ||  ||| |  || |||||||||| |||| ||||||||| |  |||||||||||||| ||||| |||| |     ||||||| ||  | |  |||||||  |||| |||  ||||  | || |  ||    || ||  ||| ||  | ||  |   
GAGAACTCTTAGAGCCAAATGAAACTGAAGACAACAATCTATCTGTTGCAGATATATGCCCGACTAATGATGGTTTGTTGGTTGCTGTAGCCATTCAGAGgtaa-----acttgtgtggttacgcttctccaa--aagtaatatgatttgct-tggtaaaatggggttcttttttatctgtttgatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78091376|gb|DV519750.1|DV519750
EST:     GATATATGTCCGAGTAATGATGGCTCATTGGTTGCTGTAGCTATTCAAAG                         TTTCAGTGGCATAATGCTTTTAGCATGTGATTTGGTAGGAAAGAAGCTATC
genomic: GATATATGTCCGAGTAATGATGGCTCATTGGTTGCTGTAGCTATTCAAAGgttagcttga ... cactctgcagTTTCAGTGGCATAATGCTTTTAGCATGTGATTTGGTAGGAAAGAAGCTATC
EST: gi|13149651|gb|BG319973.1|BG319973
EST:     GATATATGTCCGAGTAATGATGGCTCATTGGTTGCTGTAGCTATTCAAAG                         TTTCAGTGGCATAATGCTTTTAGCATGTGATTTGGTAGGAAAGAAGCTATC
genomic: GATATATGTCCGAGTAATGATGGCTCATTGGTTGCTGTAGCTATTCAAAGgttagcttga ... cactctgcagTTTCAGTGGCATAATGCTTTTAGCATGTGATTTGGTAGGAAAGAAGCTATC