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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAGAACAAGGCAATTTTACTATTGATCCTTCGTCCTTGCCTGATGCATTAGATCTTCTAGCAACATCAGACAATAGAGTACGCTTACTCATTGCTGAGgtaaactataaatgttattgtaaacttgtttcttttgattcatagaggaagaatattgttcacactggaatgcaatttccatggatgtacactccacagttttaaatatactttctattaattctactacttttaaatttcgatatctgtaatctatgctctgcactggtctctccag

Basic information

species Zea mays
transcript GRMZM2G131070_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G131070_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os06g43560.1 (Oryza sativa), 5'ss of exon 9
AGAAGAACAAGGCAATTTTACTATTGATCCTTCGTCCTTGCCTGATGCATTAGATCTTCTAGCAACATCAGACAATAGAGTACGCTTACTCATTGCTGAGgtaa-actataaatgttattgtaaacttgtttcttttgattcatagaggaagaatattgttcacactggaatgcaatttccatggatgtacactccacagttttaaatatactttctattaattctactacttttaaatttcgatatctgtaatctatgctctgcactggtctctccag
||| || |||| || | | |||||||||   || || ||||||||||| ||||||||| |  | ||||||||||||||| |||| || ||  ||||||||||||   | ||||| |  ||  |   ||  || || | |||||   |       ||   ||| ||| |||| |  |     | | | ||  |   || | |   |                                                                          
AGATGAGCAAGACACTATGACTATTGATTTATCATCTTTGCCTGATGCTTTAGATCTTGTGACGACATCAGACAATAGAATACGTTTGCTTGTTGCTGAGgtaatgttttaaatatcttttga---ttagttattgtcattca--aactccttctagc-ttctcacgggaaaggcacactta-gaaagttgagctcaaactccgacg------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240812|gb|DT648726.1|DT648726
EST:     TAGATCTTCTAGCAACATCAGACAATAGAGTACGCTTACTCATTGCTGAG                         GCTCAACTTTTAGCACGAGATGATGAACAAGGCTCTTCTGATGATGGCGAC
genomic: TAGATCTTCTAGCAACATCAGACAATAGAGTACGCTTACTCATTGCTGAGgtaaactata ... gtctctccagGCTCAACTTTTAGCACGAGATGATGAACAAGGCTCTTCTGATGATGGCGAC
EST: gi|211160611|gb|FL453145.1|FL453145
EST:     TAGATCTTCTAGCAACATCAGACAATAGAGTACGCTTACTCATTGCTGAG                         GCTCAACTTTTAGCACGAGATGATGAACAAGGCTCTTCTGATGATGGCGAC
genomic: TAGATCTTCTAGCAACATCAGACAATAGAGTACGCTTACTCATTGCTGAGgtaaactata ... gtctctccagGCTCAACTTTTAGCACGAGATGATGAACAAGGCTCTTCTGATGATGGCGAC
EST: gi|32794411|gb|CD946647.1|CD946647
EST:     GATCTTCTAGCAACATCAGACAATAGAGTACGCTTACTCATTGCTGAG                         GCTCAACTTTTAGCACGAGATGATGAACAAGGCTCTTCTGATGATGGCGAC
genomic: GATCTTCTAGCAACATCAGACAATAGAGTACGCTTACTCATTGCTGAGgtaaactata ... gtctctccagGCTCAACTTTTAGCACGAGATGATGAACAAGGCTCTTCTGATGATGGCGAC
EST: gi|211302442|gb|FL244048.1|FL244048
EST:     AGATCTTCTAGNCA-CATCAGACAATAGAGTACGCTTACTCATTGCTGAG                         GCTCAACTTTTAGCACGAGATGATGAACAAGGCTCTTCTGATGATGGCGAC
genomic: AGATCTTCTAG-CAACATCAGACAATAGAGTACGCTTACTCATTGCTGAGgtaaactata ... gtctctccagGCTCAACTTTTAGCACGAGATGATGAACAAGGCTCTTCTGATGATGGCGAC
EST: gi|211302444|gb|FL244050.1|FL244050
EST:     TAGATCTTCTAGCAACATCAGACAATAGAGTACGCTTACTCATTGCTGAG                         GCTCAACTTTTAGCACGAGATGATGAACAAGGCTCTTCTGATGATGGCGAC
genomic: TAGATCTTCTAGCAACATCAGACAATAGAGTACGCTTACTCATTGCTGAGgtaaactata ... gtctctccagGCTCAACTTTTAGCACGAGATGATGAACAAGGCTCTTCTGATGATGGCGAC