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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGGGAGGATTACTGAATGCTGTAGAGACTGTTTTGAAGCTCTCATTACCAAATGTCTACCTGTGGCTTTGCATGTTTTATTGCCTTTTCCATCTGTGgtagtaaattatattttctatctattcattcaaattcaaatacatgatcgatcctgatattattctaatatcagtcatcgatgcttcttctccgaacatgcatgctctcggagaaaattatttccttttatgctctttcaaatttgcatatttgcagtttcgaacttatattcatctatacag

Basic information

species Zea mays
transcript GRMZM2G130749_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G130749_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g10810.1 (Oryza sativa), 5'ss of exon 9
TGATGGGAGGATTACTGAATGCTGTAGAGACTGTTTTGAAGCTCTCATTACCAAATGTCTACCTGTGGCTTTGCATGTTTTATTGCCTTTTCCATCTGTGgtagtaaattatattttctatctattcattcaaattcaaatacatgatcgatcctgatattattctaatatcagtcatcgatgcttcttctccgaacatgcatgctctcggagaa---aattatttccttttatgctctttcaaatttgcatatttgcagtttcgaacttatattcatctatacag
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TGAAAGGAGGACTCCTAAATGCTGTAGAGACTGTTTTGAAACTCTCATTACCAAATGTTTACCTGTGGCTTTGCATGTTCTATGCTTTTTTCCATCTCTGgtaat---ttccattttctacttattcat----aatcaagaaaatggtcactattag-actataata-tattcaaaatcaat-ttatttctgaatgcatacatttccttgcatgatccaagcttgtgaacaaataatttctctaacac-cagacttacagttt-aaacattgat--aattgcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88756047|gb|DY540188.1|DY540188
EST:     CCAAATGTCTACCTGTGGCTTTGCATGTTTTATTGCCTTTTCCATCTGTG                         GTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAA
genomic: CCAAATGTCTACCTGTGGCTTTGCATGTTTTATTGCCTTTTCCATCTGTGgtagtaaatt ... atctatacagGTTAAACATACTTGCTGAGATTCTTCGATTTGGTGACCGAGAATTCTACAA