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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataaacaagatatacttaagaatcctaattttgcattctgcaatcatttttgtaaacgagtccaggttttagaggtttattacccctccgttcc...

Basic information

species Zea mays
transcript GRMZM2G130230_T02
intron # 9
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211002848|gb|FL384087.1|FL384087
EST:     ATCATTCGTGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: ATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
EST: gi|211483716|gb|FL115161.1|FL115161
EST:     AATCATTCGTGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
EST: gi|67037531|gb|CO464345.1|CO464345
EST:     AATCATTCGAGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
EST: gi|71447340|gb|DR828390.1|DR828390
EST:     AATCATTCGTGATATCATTCAGAATCATTTACTGCAG                         GGTTTCTGTTTGGTTGCAATGAAAAAGCCTGTCTCCCCTTA-GCCTGAGCA
genomic: AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCC-TTAAGCCTGAGCA
EST: gi|6194863|gb|AW146967.1|AW146967
EST:     AATCATTCGAGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
EST: gi|211483712|gb|FL115157.1|FL115157
EST:     AATCATTCGTGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
EST: gi|211483710|gb|FL115155.1|FL115155
EST:     AATCATTCGTGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
EST: gi|605736|gb|T27548.1|T27548
EST:     AATCATTCGTGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
EST: gi|211483711|gb|FL115156.1|FL115156
EST:     AATCATTCGTGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
EST: gi|211428715|gb|FL387534.1|FL387534
EST:     ATCATTCGTGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: ATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
EST: gi|211483713|gb|FL115158.1|FL115158
EST:     AATCATTCGTGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
EST: gi|211483714|gb|FL115159.1|FL115159
EST:     AATCATTCGTGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
EST: gi|33103286|gb|CF063246.1|CF063246
EST:     AATCATTCGAGATATCATTCAGAATCATTTACTGCAG                         GTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC
genomic: AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataa ... caatctgcagGTTTTCTGTTTGGTTGCAATGGAAAAGCCTGTCTCCCTTAAGCCTGAGCAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATCATTCGTGATATCATTCAGAATCATTTACTGCAGgtaaatataaacaagatatacttaagaatcctaattttgcattctgcaatcatttttgtaaacgagtccaggttttagaggtttattacccctccgttcc

- - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccctcc