Sequence
atgc intronic sequence ATGC exonic sequenceAATGGTGGAAGGAAAAAATGAAGATATATCGACAATTGAACTCTCTGGTGGAGCAAGGATCCATTACATTTTCCAGTCTATCTTTGTCAAAAGTTTAGAGgtgcgtaactggacagtggttttcatcatatgttgataagcgttgtcacgagtctattaaatatatatcattacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G129155_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g69130.2 (Oryza sativa), 5'ss of exon 9
AATGGTGGAAGGAAAAAATGAAGATATATCGACAATTGAACTCTCTGGTGGAGCAAGGATCCATTACATTTTCCAGTCTATCTTTGTCAAAAGTTTAGAGgtgcgtaactggacagtggttttcatcata----tgttgataagcgttgtcacgagtctattaaatatatatcattacag--------------
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AATGGTGGAGGGAAAAAATGAGGACATATCAACAATTGAGCTTTGTGGTGGAGCAAGGATCCATTATATTTTTCAATCTATATATGTAAAAAGCTTAGAGgttcgtgattttgttgcatgttcaattacaaccttttcattatgttgtaccacatcattgttctata-atgaagttatagaactttttacacag
upper sequence: GRMZM2G129155_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA15G06380.1 (Glycine max), 5'ss of exon 9
---AATGGTGGAAGGAAAAAATGAAGATATATCGACAATTGAACTCTCTGGTGGAGCAAGGATCCATTACATTTTCCAGTCTATCTTTGTCAAAAGTTTAGAGgtgcgtaactggacagtggttttcatcatatgttgataa-------gcgttgtcacgagtct---attaaatatatatcatta-cag--------------
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CTCCATGCTTGAGGGAAAGAATGAG---ATGTCTACATCCGAGCTATCTGGTGGAGCACGAATCCATTACATTTTTCAATCCATCTTTGTCAAAAGTTTAGAGgtatatgatgctgtatttatgtttgata-atgttaaaaatatgcctgccctcacactacacttgaattaaagatgaaaaatgagcaggctataatgaatcc
upper sequence: GRMZM2G129155_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA04G16340.1 (Glycine max), 5'ss of exon 9
AATGGTGGAAGGAAAAAATGAAGATATATCGACAATTGAACTCTCTGGTGGAGCAAGGATCCATTACATTTTCCAGTCTATCTTTGTCAAAAGTTTAGAGgtgcgtaactggacagtggttttcatcatatgttgataagc--gttgtcacgagtctattaaatatatatcatta-cag---------------------
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CATGGTTGAGGGAAATAATGAGGAGATTTCTACATCTGAACTATTTGGTGGAGCACGAATCCATTACATTTTTCAATCTATCTTTGTCAGAAGTTTAGAGgtatataatcccttatttatgtatggatgttaaaaatatgcctgctctcatgctacatttaaagatgggaaataagcaggctataattaacgcattagcc
upper sequence: GRMZM2G129155_T02 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA13G32940.1 (Glycine max), 5'ss of exon 9
---AATGGTGGAAGGAAAAAATGAAGATATATCGACAATTGAACTCTCTGGTGGAGCAAGGATCCATTACATTTTCCAGTCTATCTTTGTCAAAAGTTTAGAGgtgcgtaac----------tggacagtggttttcatcatatgttgataagcgttgtcacgagtctattaaatatatatcatta-cag--------------
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CTCCATGCTTGAGGGAAAGAATGAG---ATGTCTACATCCGAGCTATCTGGTGGAGCACGAATCCATTACATTTTTCAATCCATCTTTGTCAGAAGTTTAGAGgtatataatgctgtatttacatatgataatgttaaaaatatgcctgttctcat-gctacacttgaattaaagatggaaagtgaacaggctataatgaatcc
upper sequence: GRMZM2G129155_T02 (Zea mays), 5'ss of exon 9
lower sequence: AT4G33650.1 (Arabidopsis thaliana), 5'ss of exon 9
AATGGTGGAAGGAAAAAATGAAGATATATCGACAATTGAACTCTCTGGTGGAGCAAGGATCCATTACATTTTCCAGTCTATCTTTGTCAAAAGTTTAGAGgtgcgt------aactggacagtggttttcatcatatgttgataagcgttgt---cacgagtctattaaatat----atatcattacag-----------
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ATTGCTGGAAGGGAAAAGTGAAGAAATGTCTACGTCAGAGCTCTCTGGAGGAGCAAGAATTCACTATATTTTCCAGTCAATCTTTGTTAAGAGTTTGGAGgttcgtttgggcaatcgttaaacttttttccttgagcttgaacagttgttatacattcccgtttcttaacctcgccaatacttttgcgtactttcggatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|32832868|gb|CD972546.1|CD972546EST: GAGCAAGGATCCATTACATTTTCCAGTCTATCTTTGTCAAAAGTTTAGAG GAGGTTGATCCTTGTGAGGATGTTACAGATGAAGATATCCGTATGGCTATT
genomic: GAGCAAGGATCCATTACATTTTCCAGTCTATCTTTGTCAAAAGTTTAGAGgtgcgtaact ... atcattacagGAGGTTGATCCTTGTGAGGATGTTACAGATGAAGATATCCGCATGGCTATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AATGGTGGAAGGAAAAAATGAAGATATATCGACAATTGAACTCTCTGGTGGAGCAAGGATCCATTACATTTTCCAGTCTATCTTTGTCAAAAGTTTAGAGgtgcgtaactggacagtggttttcatcatatgttgataagcgttgtcacgagtctattaaatatatatcattacag
- - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG