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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgctgaggctgttgtttatgatggtaaatagtatacttccgtttcttgtctgatcatatgttttgcatatcag

Basic information

species Zea mays
transcript GRMZM2G128995_T05
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os05g51530.1 (Oryza sativa), 5'ss of exon 9
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttg--ctgaggct--gttgtttatgatggtaaatagtatacttccgtttcttgtctgat--catatgttttgcatatcag------
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||| |   ||   | |  || || |||||| || ||   | |||||   |  ||  ||| ||  |||||| | |  || |         
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATTCTTAGATATGGTCTTCCCCCATCATTCCTGgtaatctattctactgttacgtagtatatgatagtcaaatttgtactttgatgcctgatctaatatcatatgctgtttatgttttcatcag

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA16G05470.1 (Glycine max), 5'ss of exon 9
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct-----gaggctgttgtttatgatggtaaatagtatacttccgtttcttgtctgatcatatgttttgcatatcag
|| |||||||||||||||||||| |||||||||||| | ||||  |||||||| || ||||||||||| || ||||| ||| ||||||| | ||      |       ||  |   |  | |    |    ||      |     | |     | ||  | ||  |||
GTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCACCATCTTTCTTGgtaatatactcttctaaaatcaaagtgcagtctaatgacccctgggattttcaaacactgatcactgagtattgggtattccag

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA19G27360.1 (Glycine max), 5'ss of exon 9
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct-----gaggctgttgttta---tgatggtaaatagtatacttccgtttcttgtctgatcatatgttttgcatatcag
|| |||||||||||||||||||| |||||||||||| | ||||  |||||||| || ||||||||||| |||||||| ||| ||||||| | ||      |       ||| |   | ||||    | | ||  || |   |  |||    | |    ||  | ||  |||
GTTTTCAGTTCCTGGATGCACTTTTGTGCTGTGCGTTTATTTGCTGAGAGCATTCTGAGATATGGTCTGCCTCCATCCTTCTTGgtaatatactcttctaaaatcaaagttcagtctaatggcccctgggat--tttcaaatactgttcactgac-cattgggtattccag

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA02G07260.1 (Glycine max), 5'ss of exon 9
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgctgaggctgt----tgtttatgatggtaaatagtatacttc---cgtttcttgtctgatcatatgttttgcatatcag-----
|| ||||| |||||||||||||| ||||| |||||||| |||   |||||||| || ||||||||||| || ||||| ||| |||||  |        ||||    |   | | |   | | |  | | ||||     |||  | ||||| | |   || |     |||      
GTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACTGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGgtagatatacccatctgtacaatagctttcaccttcattttt-tccttcaaatattttatctctgacccttgattcttgtggtcattccag

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA16G26220.1 (Glycine max), 5'ss of exon 9
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgctgaggctgttgtttatgatggtaaatagtatacttccgtttcttgtctgatcatatgttttgcatatcag---------------------
|| ||||| |||||||||||||| ||||| |||||||| |||   |||||||| || ||||||||||| || ||||| ||| |||||  |     |  |  || | ||  |  |     ||  | | ||  || ||| |  ||  || | | |  | ||||                       
GTTTTCAGCTCCTGGATGCACTTTTGTGCAGTGCGTGTATTTACCGAGAGCATTCTGAGATATGGTCTTCCACCATCTTTCTTGgtagat-----atacccttctgtacaacagctttcagctt-catcttttccttcttcgaatattt-tatcacttatccttgattcttgtggtcattccag

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT1G12840.1 (Arabidopsis thaliana), 5'ss of exon 9
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttg----ctgaggctgt--tgtttatgatggtaaatagtatacttccgtttc--ttgtctgatca-tatgttttgcatatcag-
|| ||||| ||||||||||| |||||||||||||||   || |  ||||||||  | ||||| ||| | |||||  | ||| |||||| ||        | ||| |  | |||  ||   |   |  ||  || |  | ||  ||  |  || | | | | |||  | ||   
GTTTTCAGCTCCTGGATGCATTTCTGTGCTGTGCGTACATTCGCTGAGAGCATTATGAGATACGGTTTACCTCCGGCGTTCTTGgtaaattaggactccaagctatgctattttagagaattcctc-taccctactatctcccttaccaaattactttctcttgtctttccag

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv14s0068g01280.t01 (Vitis vinifera), 5'ss of exon 9
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgctgaggctgttgtttatgatggtaaatagtatacttccgtttcttgtctgatcatatgttttgcatatcag------------------
|| ||||| ||||||||||| || |||||||| |||||||||| |||||| ||||||||||||||  | || ||||| ||| |||||| |     |  |   |    |   |  |   | | || | ||| |  |   | |  |  |||   |||   ||  |                  
GTTTTCAGCTCCTGGATGCATTTTTGTGCTGTACGTGTCTTTGCAGAGAGTATCCTTAGATATGGCTTGCCACCATCCTTCTTGgtaaataaaccattcaact-ccaacattccttcttggaatccctccctcacgaattttcttttattgattgaggattggttgttgagatgatttcag

upper sequence: GRMZM2G128995_T01 (Zea mays), 5'ss of exon 9
lower sequence: Vv17s0000g00460.t01 (Vitis vinifera), 5'ss of exon 9
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaa------tttgctgaggctgttgtttatgatggtaaatagtatacttccgtttcttgtctgatcatatgttttgcatatcag
|| ||||| |||||||||||||| |||||||| |||||||||| ||||||||| || ||||||||  | || ||||| ||| | ||||      |||||  |  |   | ||||      ||     | |  |  | |||    | | |   |  | || |  | ||||
GTCTTCAGCTCCTGGATGCACTTTTGTGCTGTACGTGTCTTTGCAGAGAGCATTCTGAGATATGGATTGCCACCATCTTTCTTAgtaagtaatctttgcatacccatatttttagctcattagtccctctgttatcatttacattttcaatgttggattgg--tttcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88747608|gb|DY531749.1|DY531749
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|67019107|gb|CO447856.1|CO447856
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|31364225|gb|CD448580.1|CD448580
EST:     TCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: TCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|148963814|gb|EE014911.2|EE014911
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|40334835|gb|CK368905.1|CK368905
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|60338283|gb|DN205256.1|DN205256
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|17929493|gb|BM266453.1|BM266453
EST:     CTCCCTCCATCATTCCTG                         TCTACTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAAGGAGCAT
genomic: CTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGT-AAGGAGCAT
EST: gi|37401333|gb|CF638029.1|CF638029
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|37377800|gb|CF625543.1|CF625543
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|33095927|gb|CF055921.1|CF055921
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|32910284|gb|CF015096.1|CF015096
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|60354564|gb|DN221537.1|DN221537
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|12972189|gb|BG267858.1|BG267858
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|211151579|gb|FL387831.1|FL387831
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|24763202|gb|CA398382.1|CA398382
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|149000733|gb|EE037951.2|EE037951
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|211040893|gb|FL451654.1|FL451654
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|149098810|gb|EE184821.2|EE184821
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|148968977|gb|EE019671.2|EE019671
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TTTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATT
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|67013699|gb|CO442448.1|CO442448
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|166580366|gb|EG282478.1|EG282478
EST:     TTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: TTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|110964923|gb|EE184823.1|EE184823
EST:     GTGTTTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|40303110|gb|CK347497.1|CK347497
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|149000703|gb|EE037917.2|EE037917
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|148954148|gb|EC899547.2|EC899547
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|67017448|gb|CO446197.1|CO446197
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|37391067|gb|CF632773.1|CF632773
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|32907248|gb|CF012061.1|CF012061
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|14245311|gb|BG873893.1|BG873893
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|60358961|gb|DN225934.1|DN225934
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGC
EST: gi|78076481|gb|DV504915.1|DV504915
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|211201056|gb|FL359983.1|FL359983
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGKTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|37378328|gb|CF625849.1|CF625849
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTCGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
EST: gi|71427969|gb|DR809019.1|DR809019
EST:     GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTG                         TCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC
genomic: GTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 44 (upstream exon), 49 (downstream exon)
Score: 173

GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 259

GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 256

GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 248

GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgct ... tgcatatcagTCTGCTGTTCTTGCACCATCTACAAAGAGCGAGAAGAAAGTAAGGAGCATCTTAGAGGAGCTCTGCGGCAATGCCCATAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATTCAGTTCCTGGATGCACTTCTGTGCTGTGCGTGTCTTTGTAGAGAGCATCCTTAGATATGGTCTCCCTCCATCATTCCTGgtaatttgctgaggctgttgtttatgatggtaaatagtatacttccgtttcttgtctgatcatatgttttgcatatcag

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