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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTATGAATATTTGCTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggactattgtcaacctggtttcacaatgctaagtaggcattgcaatttatttgattcaacatggataacaattccattcatgtttttcattttag

Basic information

species Zea mays
transcript GRMZM2G128914_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128914_T03 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os04g51690.1 (Oryza sativa), 5'ss of exon 9
CTTCTATGAATATTTGCTCAAGGTCTGGATCCAGGGGAATAAAACTGAGCATGTAAAACACTACAGgtttgggactattgtcaacctggtttcacaatgctaagtaggcattgc-aatttatttgattcaacatggataacaattccattcatgtttttcattttag--------------------
|||||| || || ||||||||||| ||| |||||||||||||||||||||||||||| || |||||||||| | ||||   |  |    ||||||  |   |  |   | |  |  |||| ||| | |  | ||     ||| || |||| |   | || ||    |                    
CTTCTACGAGTACTTGCTCAAGGTTTGGGTCCAGGGGAATAAAACTGAGCATGTAAAGCATTACAGgtttgagcctataagcctcact-tttcaccttttcatattcccttcactgatttcttttactggaaattccatacagtttcatttagcatgttgataactgtttatatgatttttgactag