1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCCTGGCTAAGGAGTTCCTTGGTGCTTCCGGTGACAAGCGAAAGGAAGTCCTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactcttcccttagttattggcctatctgccttgagctattcattgatctcaattaacgttataagaatgttattagttaagtgagttgaattttccttattgcgtaataaatcag
species | Zea mays |
transcript | GRMZM2G128171_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATEST: gi|78117463|gb|DV535850.1|DV535850
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGAT
EST: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAAEST: gi|67015622|gb|CO444371.1|CO444371
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
EST: TCTCCATTATGGAGGAGGAG-CAGATAN-CTTCA-TG-TTCTGCTGCAAG -CATGGAAAG--CTATGTA-CC-TCGCAAAEST: gi|15208731|gb|BI430615.1|BI430615
genomic: TCTCCAGTATGGAGGAGGAGGCAGATAAGCT-CAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAA
EST: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAG GCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
genomic: CTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactctt ... aataaatcagGCATGGAAAGGTCTATGTAACCATCGCAAAGAAGATTCTAGAGAAAGGCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCCTGGCTAAGGAGTTCCTTGGTGCTTCCGGTGACAAGCGAAAGGAAGTCCTCTCCAGTATGGAGGAGGAGGCAGATAAGCTCAGTGGTTCTGCTGCAAGgtaaactcttcccttagttattggcctatctgccttgagctattcattgatctcaattaacgttataagaatgttattagttaagtgagttgaattttccttattgcgtaataaatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC