1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTGGTCAAGAACTTGGGGAGAAGAACACTTTGGTAACGGgtacgtgacataatactgttttggtctagcatttgtacatactccctccgtttatttttagttgtcgctgcatagttcaattttgcactattcagcgaca...
species | Zea mays |
transcript | GRMZM2G126812_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTTGGTCAAGAACTTGGGGAGAAGAACACTTTGGTAACGG TAAAGTCCACAAGTATGGAAAGAGCACAACTGGCGAGAGCTGGGATTTGGTEST: gi|60352416|gb|DN219389.1|DN219389
genomic: GTTGGTCAAGAACTTGGGGAGAAGAACACTTTGGTAACGGgtacgtgaca ... tggatttcagTAAAGTCCACAAGTATGGAAAGAGCACAACTGGCGAGAGCTGGGATTTGGT
EST: GTTGGTCAAGAACTTGGGGAGAAGAACACTTTGGTAACGG AAAAGTCCACAAGTATGGAAAGAGCACAACTGGCGAGAGCTGGGATTTGGTEST: gi|32164816|gb|CD670455.1|CD670455
genomic: GTTGGTCAAGAACTTGGGGAGAAGAACACTTTGGTAACGGgtacgtgaca ... tggatttcagTAAAGTCCACAAGTATGGAAAGAGCACAACTGGCGAGAGCTGGGATTTGGT
EST: GTTGGTCAAGAACTTGGGGAGAAGAACACTTTGGTAACGG TAAAGTCCACAAGTATGGAAAGAGCACAACTGGCGAGAGCTGGGATTTGGTEST: gi|211424598|gb|FL437750.1|FL437750
genomic: GTTGGTCAAGAACTTGGGGAGAAGAACACTTTGGTAACGGgtacgtgaca ... tggatttcagTAAAGTCCACAAGTATGGAAAGAGCACAACTGGCGAGAGCTGGGATTTGGT
EST: GTTGGTCAAGAACTTGGGGAGAAGAACACTTTGGTAACGG TAAAGTCCACAAGTATGGAAAGAGCACAACTGGCGAGAGCTGGGATTTGGT
genomic: GTTGGTCAAGAACTTGGGGAGAAGAACACTTTGGTAACGGgtacgtgaca ... tggatttcagTAAAGTCCACAAGTATGGAAAGAGCACAACTGGCGAGAGCTGGGATTTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGTCAAGAACTTGGGGAGAAGAACACTTTGGTAACGGgtacgtgacataatactgttttggtctagcatttgtacatactccctccgtttatttttagttgtcgctgcatagttcaattttgcactattcagcgaca
- - - AAGAAC
- - - - - - - - GGAGAA
- - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccctcc