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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAACTTAGCTGCCTAAGCTGGAACAAGTACTCAAAAAATATTATCGCAAGCAGTGACTATGAGGGTATAGTAACTGTGTGGGATGTCCAGACCCGCCAGgtatccactctattttacagttcattctgcaatggccattgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctag

Basic information

species Zea mays
transcript GRMZM2G126795_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G126795_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 8
TAAACTTAGCTGCCTAAGCTGGAACAAGTACTCAAAAAATATTATCGCAAGCAGTGACTATGAGGGTATAGTAACTGTGTGGGATGTCCAGACCCGCCAGgtatc---cactctattttacagttcattctgcaatggccattgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctag-
|||||| |||||||| |||||||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||      |||| ||  |||||||||| ||||     || |  ||| ||||  |   ||||  |     || | ||| ||||||    | |  |   
TAAACTCAGCTGCCTTAGCTGGAACAAGTACTCAAAAAATGTTATAGCAAGCAGCGACTATGAGGGTATAGTAACTGTTTGGGATGTCCAAACCCGCCAGgtatttcttgctctgttccacagttcattttgca-----cact--tgtgttattttctgaacttggattcatgatatttatgtattcaatcttctttag

upper sequence: GRMZM2G126795_T01 (Zea mays), 5'ss of exon 9
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 8
TAAACTTAGCTGCCTAAGCTGGAACAAGTACTCAAAAAATATTATCGCAAGCAGTGACTATGAGGGTATAGTAACTGTGTGGGATGTCCAGACCCGCCAGgtatccactctatttta--cagttcattctgcaatggcca--ttgctgtattataattcaaactgaggcatgtggtttttgtgtattgtgacatgctag
||||||||| ||| | || ||||| ||| |   |||||||   || ||||||||||| ||||| || |||||||| |||||||||||    ||  | |||||    ||| ||    |   |  | |    |||      |  |     | | || | |    | | |   |    ||||| ||||   |||        
TAAACTTAGTTGCTTGAGTTGGAATAAGCATGAAAAAAATCACATAGCAAGCAGTGATTATGAAGGAATAGTAACAGTGTGGGATGTAACTACTAGGCAGgtgagtactttacccaaagtatctaacatcgcacctataagatattcatctcatgaattctgcagcgtatttgaatttttatgtaaactgaggcag---