1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTGATTCTTTCCCGTATCAAGGTCCACTTGAATGCACTGAAAAGGTACACCTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagatcccaagacccaaagctatatactgaaaaccatttatccttgtcatttgaccactgagcgtttgcattttgtttgtgtttcttatcatccttttcag
species | Zea mays |
transcript | GRMZM2G123537_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCAEST: gi|211232325|gb|FK959922.1|FK959922
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCAEST: gi|32867178|gb|CF006860.1|CF006860
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCAEST: gi|89760633|gb|DY688965.1|DY688965
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AAGGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCAEST: gi|24763548|gb|CA398720.1|CA398720
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCAEST: gi|60394394|gb|DN227264.1|DN227264
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCAEST: gi|60355644|gb|DN222617.1|DN222617
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCAEST: gi|113702621|gb|EE680125.1|EE680125
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCAEST: gi|60355743|gb|DN222716.1|DN222716
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCAEST: gi|60398356|gb|DN231172.1|DN231172
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCAEST: gi|60399207|gb|DN232021.1|DN232021
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCAEST: gi|60357180|gb|DN224153.1|DN224153
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
EST: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAG AACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
genomic: CTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagat ... tccttttcagAACGGCGCATTGGCGCACTACCCTCCTGCTGAGATGGCAATGGTTAGGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGATTCTTTCCCGTATCAAGGTCCACTTGAATGCACTGAAAAGGTACACCTATGGGAAGCATATTGTGACACGTGTTGAGAAGCTTATTGCCGCAGGAGgtaaatagatcccaagacccaaagctatatactgaaaaccatttatccttgtcatttgaccactgagcgtttgcattttgtttgtgtttcttatcatccttttcag
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