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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAATGTTGTTGAGAAGTGTCTTACTTTTGGTTCTCCTGAGCAACGGCAGATTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttcaacattcagtctcatcttgcctttttcttttagaatcggtagttcgatggtctgctgctgcaggattggactcgatgcattctagcaacacttgtaatgtaaacttatgtcctccag

Basic information

species Zea mays
transcript GRMZM2G123537_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G123537_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g57390.1 (Oryza sativa), 5'ss of exon 9
CAATGTTGTTGAGAAGTGTCTTACTTTTGGTTCTCCTGAGCAACGGCAGATTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttcaacattcagtctcatcttgcctttttcttttagaatcggtagttcgatggtctgctgctgcaggattggactcgatgcattctagcaacacttgtaatgtaaacttatgtcctccag
|||||||||||||||||| ||| | || |||  ||||||| | || ||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| |||||| | |        | |   |  | ||| | ||   |    | | ||  |||       | |  ||| || |    |||  | | ||  || |    || |||                 
CAATGTTGTTGAGAAGTGCCTTTCCTTCGGTAGTCCTGAGGAGCGCCAGATTCTAATTAATGAAATGCTTGGCACAACTGACGAGAATGAGCCATTACAGgtatgttttgatccagttacgtaagtgtatcgtttccgttcgta----gaattttcatga------gttttaggctttgctgtgat--aatatattaatatggttagtgttt---------------

upper sequence: GRMZM2G123537_T02 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA10G35290.1 (Glycine max), 5'ss of exon 11
CAATGTTGTTGAGAAGTGTCTTACTTTTGGTTCTCCTGAGCAACGGCAGATTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttcaacattcagtctcatcttgcctttttcttttagaatcggtagttcgatggtctgctgctgcag--gattggactcgatgcattctagcaacacttgtaatgtaaacttatgtcctccag
 |||||| ||||||| ||| |  ||||||||  ||||||  |||| |||||| |  | |||||||||||||||||  |||||||||| ||||| |||||||| ||  | |     ||  |        || |     |||   |  | | |    |||| |||| | ||  |     ||  |    ||  | | ||| |  |                           
AAATGTTATTGAGAAATGTTTGGCTTTTGGTAGTCCTGAAGAACGTCAGATTTTGGTGAATGAAATGCTTGGCACTTCTGATGAGAATGAGCCCTTACAGgtatggctcctttcatctcttgttcaaagcttcagcttttccaaggctgga----gatgatctgttactcaaactattttcatgtcatttaatttagtattagc-------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47961753|gb|CN844462.1|CN844462
EST:     TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAG                         GCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
genomic: TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttc ... tgtcctccagGCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
EST: gi|211232325|gb|FK959922.1|FK959922
EST:     TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAG                         GCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
genomic: TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttc ... tgtcctccagGCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
EST: gi|89760633|gb|DY688965.1|DY688965
EST:     TAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAG                         GCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
genomic: TAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttc ... tgtcctccagGCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
EST: gi|60394394|gb|DN227264.1|DN227264
EST:     TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAG                         GCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
genomic: TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttc ... tgtcctccagGCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
EST: gi|60355644|gb|DN222617.1|DN222617
EST:     TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAG                         GCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
genomic: TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttc ... tgtcctccagGCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
EST: gi|113702621|gb|EE680125.1|EE680125
EST:     TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAG                         GCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
genomic: TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttc ... tgtcctccagGCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
EST: gi|60355743|gb|DN222716.1|DN222716
EST:     TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAG                         GCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
genomic: TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttc ... tgtcctccagGCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
EST: gi|60398356|gb|DN231172.1|DN231172
EST:     TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAG                         GCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
genomic: TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttc ... tgtcctccagGCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
EST: gi|60399207|gb|DN232021.1|DN232021
EST:     TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAG                         GCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
genomic: TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttc ... tgtcctccagGCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
EST: gi|166551495|gb|EG205460.1|EG205460
EST:     TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAG                         GCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGC
genomic: TTCTAATCAATGAAATGCTTGGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttc ... tgtcctccagGCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGC
EST: gi|60357180|gb|DN224153.1|DN224153
EST:     GGCACAACTGATGAGAACGAGCCGTTACAG                         GCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG
genomic: GGCACAACTGATGAGAACGAGCCGTTACAGgtttgttttc ... tgtcctccagGCAATGATGAAAGACCAGTTCGCAAACTATGTTGTGCAGAAGGTTCTGGAG