1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTCTTGGTACCCCAACGCGCGAGGAAATCCGATGTATGAATCCAAACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaatttatttatcatgttatatcattgaatggtagaaaacttaaactaaaatacctttgctcttgcag
species | Zea mays |
transcript | GRMZM2G121790_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|211251114|gb|FL353291.1|FL353291
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|32855414|gb|CD995095.1|CD995095
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|211298028|gb|FL233897.1|FL233897
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|71430637|gb|DR811687.1|DR811687
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|149107144|gb|EE189033.2|EE189033
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: GAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|110961978|gb|EE182030.1|EE182030
genomic: GAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|211326797|gb|FL341548.1|FL341548
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTTCGCTTCACGCTTEST: gi|76922776|gb|DV169168.1|DV169168
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCT-CGCTTCACGCTT
EST: TTCCTCAGATCAAAGCTCACCCATGGCAC-AG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|60338092|gb|DN205065.1|DN205065
genomic: TTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|110194431|gb|EC876329.1|EC876329
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: CGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|87153591|gb|DY398380.1|DY398380
genomic: CGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|76287881|gb|DV027449.1|DV027449
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|60350723|gb|DN217696.1|DN217696
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|60358944|gb|DN225917.1|DN225917
genomic: ATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|148952786|gb|EC898772.2|EC898772
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: TCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|31352553|gb|CD436910.1|CD436910
genomic: TCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTGEST: gi|20300401|gb|BQ163344.1|BQ163344
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
EST: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAG ATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
genomic: ACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaa ... gctcttgcagATTTTCCACAAGCGGATGCCTCCAGAAGCTATAGATCTCGCTTCACGCTTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTTGGTACCCCAACGCGCGAGGAAATCCGATGTATGAATCCAAACTACACCGAGTTTAGATTTCCTCAGATCAAAGCTCACCCATGGCACAAGgtatgtgaaatttatttatcatgttatatcattgaatggtagaaaacttaaactaaaatacctttgctcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA