1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TTCACAATGCGCATTTGTTATTGACAAAATCATTGAAATTACATCTGGTACCGCTGAGGGGTGCAACTTTGGCAACATTGCTGTCCTATATCGAAGACAGgttgaaaaaacgttatgctttcaaaaggtgtctttatgcttgcgacctaattttctcttgcacag
species | Zea mays |
transcript | GRMZM2G121427_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCGCTGAGGGGTGCAACTTTGGCAACATTGCTGTCCTATATCGAAGACAG ATAACTGGCAAAGCTTTCCAAGTCTCCTTCCGCEST: gi|18053134|gb|BM318792.1|BM318792
genomic: CCGCTGAGGGGTGCAACTTTGGCAACATTGCTGTCCTATATCGAAGACAGgttgaaaaaa ... tcttgcacagATAACTGGCAAAGCTTTCCAAGTCTCCTTCCGC
EST: CCGCTGAGGGGTGCAACTTTGGCAACATTGCTGTCCTATATCGAAGACAG ATAACTGGCAA-GCTTTCCAAGTCTCCTTCCGCEST: gi|78545014|gb|DV622512.1|DV622512
genomic: CCGCTGAGGGGTGCAACTTTGGCAACATTGCTGTCCTATATCGAAGACAGgttgaaaaaa ... tcttgcacagATAACTGGCAAAGCTTTCCAAGTCTCCTTCCGC
EST: CCGCTGAGGGGTGCAACTTTGGCAACATTGCTGTCCTATATCGAAGACAG ATAACTGGCAAAACTTTCCAAGTCTCCTTCCGCAACAGGAAAATTCCCTTT
genomic: CCGCTGAGGGGTGCAACTTTGGCAACATTGCTGTCCTATATCGAAGACAGgttgaaaaaa ... tcttgcacagATAACTGGCAAAGCTTTCCAAGTCTCCTTCCGCAACAGGAAAATTCCCTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCACAATGCGCATTTGTTATTGACAAAATCATTGAAATTACATCTGGTACCGCTGAGGGGTGCAACTTTGGCAACATTGCTGTCCTATATCGAAGACAGgttgaaaaaacgttatgctttcaaaaggtgtctttatgcttgcgacctaattttctcttgcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA