1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
TGAGAAACAAAAATTAGTGGATGATGTTGAGGAATTGGAGAATATGTCACCAAAATCACTATGGTTGAAAGATCTTGATGCTTTTGAGAAAGAACTGGATgtaagcaatgccattttgtgctgttatgctagcttccgtgttctgctacttcacttaatcacttgccaactttgatgcag
species | Zea mays |
transcript | GRMZM2G121210_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CAAAATCACTATGGTTGAAAGATCTTGATGCTTTTGAGAAAGAACTGGAT GTGCTTGATCAAATGGATCTAGCAGEST: gi|22819854|gb|BU499944.1|BU499944
genomic: CAAAATCACTATGGTTGAAAGATCTTGATGCTTTTGAGAAAGAACTGGATgtaagcaatg ... tttgatgcagGTGCTTGATCAAATGGATCTAGCAG
EST: CAAAATCACTATGGTTGAAAGATCTTGATGCTTTTGAGAAAGAACTGGAT GTGCTTGATCAAATGGATCTAGCAGAGGAACTGCAAAGGGAAAAGAGGATAEST: gi|211185794|gb|FL324655.1|FL324655
genomic: CAAAATCACTATGGTTGAAAGATCTTGATGCTTTTGAGAAAGAACTGGATgtaagcaatg ... tttgatgcagGTGCTTGATCAAATGGATCTAGCAGAGGAACTGCAAAGGGAAAAGAGGATA
EST: AGATCTTGATGCTTTTGAGAAAGAACTGGAT GTGCTTGATCAAATGGATCTAGCAGAGGAACTGCAAAGGGAAAAGAGGATAEST: gi|21987134|gb|BQ778662.1|BQ778662
genomic: AGATCTTGATGCTTTTGAGAAAGAACTGGATgtaagcaatg ... tttgatgcagGTGCTTGATCAAATGGATCTAGCAGAGGAACTGCAAAGGGAAAAGAGGATA
EST: CAAAATCACTATGGTTGAAAGATCTTGATGCTTTTGAGAAAGAACTGGAT GTGCTTGATCAAATGGATCTAGCAGAGGAACTGCAAAGGGAAAAGAGGATAEST: gi|31664432|gb|CD573365.1|CD573365
genomic: CAAAATCACTATGGTTGAAAGATCTTGATGCTTTTGAGAAAGAACTGGATgtaagcaatg ... tttgatgcagGTGCTTGATCAAATGGATCTAGCAGAGGAACTGCAAAGGGAAAAGAGGATA
EST: CAAAATCACTATGGTTGAAAGATCTTGATGCTTTTGAGAAAGAACTGGAT GTGCTTGATCAAATGGATCTAGCAGAGGAACTGCAAAGGGAAAAGAGGATA
genomic: CAAAATCACTATGGTTGAAAGATCTTGATGCTTTTGAGAAAGAACTGGATgtaagcaatg ... tttgatgcagGTGCTTGATCAAATGGATCTAGCAGAGGAACTGCAAAGGGAAAAGAGGATA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAGAAACAAAAATTAGTGGATGATGTTGAGGAATTGGAGAATATGTCACCAAAATCACTATGGTTGAAAGATCTTGATGCTTTTGAGAAAGAACTGGATgtaagcaatgccattttgtgctgttatgctagcttccgtgttctgctacttcacttaatcacttgccaactttgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC