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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTTGCAACCTGATAGAGGACTAACATGGCAAATGACTAAACGGCGTGGTGACCAGGAAGTTCACAAgtgagatgggaatctatatatgtttttcaatacttaatgatgtaatttcttagtaacatgtttccttgttacacag

Basic information

species Zea mays
transcript GRMZM2G119725_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G119725_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g19510.1 (Oryza sativa), 5'ss of exon 9
TTAGAAAGCATGGGTTGGAAATCTCTCAGCCTGGTTTGCAACCTGATAGAGGACTAACATGGCAAATGACTAAACGGCGTGGTGACCAGGAAGTTCACAAgtgagatgg-gaatctatata-tgtttttcaatacttaatgatgtaatttcttagtaacatgttt------ccttgttacacag---
|||| ||||||||| | || |||||||||||||||||||||||||| |  ||||| |||||||||||||| |||||||| ||||| || ||||||||||||||||  |  ||||| ||||  | || ||||||  |||||  |       ||   ||| ||  ||      | || ||   ||    
TTAGGAAGCATGGGCTAGATATCTCTCAGCCTGGTTTGCAACCTGACAAGGGACTGACATGGCAAATGACAAAACGGCGAGGTGATCAAGAAGTTCACAAgtgagccgctgaatccatatggttttattcaatgattaatcgttggccacctatataagattcttgagtaacttttttcttcaacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148928292|gb|EE284900.2|EE284900
EST:     GGACTAACATGGCAAATGACTAAACGGCGTGGTGACCAGGAAGTTCACAA                         AGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATG
genomic: GGACTAACATGGCAAATGACTAAACGGCGTGGTGACCAGGAAGTTCACAAgtgagatggg ... tgttacacagAGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATG
EST: gi|149108357|gb|EE292695.2|EE292695
EST:     GGACTAACATGGCAAATGACTAAACGGCGTGGTGACCAGGAAGTTCACAA                         AGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATG
genomic: GGACTAACATGGCAAATGACTAAACGGCGTGGTGACCAGGAAGTTCACAAgtgagatggg ... tgttacacagAGTAACTGAGGAGAGACCAGGCTGGTGCACTGATCCACATCTACCACCATG