1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
TGAATTCGATATGGAGGGGAAAGTGTGTGGTGTCACATCTGAAGGTGAAACTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAGgtgaatactctctatatccagattttagagggcttggttatttcggtgccaaatacttatattttgcttgatgacaagctaatttactgatttttccatcttgaaaaagtatttgttattatatgaccttctggtgtttttggtaaacttttttttctcatttttttgccaccctaatgtttctcgacag
species | Zea mays |
transcript | GRMZM2G117507_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAG GTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCAEST: gi|5296179|gb|AI782859.1|AI782859
genomic: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAGgtgaatactc ... ttctcgacagGTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCA
EST: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAG GTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCAEST: gi|31352817|gb|CD437174.1|CD437174
genomic: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAGgtgaatactc ... ttctcgacagGTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCA
EST: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAG GTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCAEST: gi|6194638|gb|AW146742.1|AW146742
genomic: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAGgtgaatactc ... ttctcgacagGTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCA
EST: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAG GTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCAEST: gi|5901301|gb|AW042401.1|AW042401
genomic: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAGgtgaatactc ... ttctcgacagGTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCA
EST: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAG GTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCAEST: gi|32934162|gb|CF038974.1|CF038974
genomic: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAGgtgaatactc ... ttctcgacagGTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCA
EST: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAG GTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCAEST: gi|15313508|gb|BI478735.1|BI478735
genomic: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAGgtgaatactc ... ttctcgacagGTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCA
EST: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAG GTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCAEST: gi|5895558|gb|AW036804.1|AW036804
genomic: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAGgtgaatactc ... ttctcgacagGTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCA
EST: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAG GTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCA
genomic: CTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAGgtgaatactc ... ttctcgacagGTCAGGAAGATTGGTAGAGTTGTTCGTGCAATTGCTATCATGAGCCACCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGAATTCGATATGGAGGGGAAAGTGTGTGGTGTCACATCTGAAGGTGAAACTGCAAAGTGCAAGAAGGTGGTGTGTGATCCTTCGTATTTACAAAACAAGgtgaatactctctatatccagattttagagggcttggttatttcggtgccaaatacttatattttgcttgatgacaagctaatttactgatttttccatcttgaaaaagtatttgttattatatgaccttctggtgtttttggtaaacttttttttctcatttttttgccaccctaatgtttctcgacag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG