1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGGGGAGGAAGATACAGCGCATTTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgagtggaaatttttgtgcttcataccagactgacagtgaatcttaccgaagcaatatacaccaatcaactagtttattatgatgaaattattt...
species | Zea mays |
transcript | GRMZM2G114758_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|110193278|gb|EC875176.1|EC875176
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|213167931|gb|FM194811.1|FM194811
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAANNNNGTCACGCATTCTTGTCTCTAA-CAN NNNTCTCCTGAAAGCATACTCCCAEST: gi|78544567|gb|DV622065.1|DV622065
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAATGTGAAAATGGAGCTGAGATTATCAAEST: gi|86468292|gb|DY234662.1|DY234662
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|211377879|gb|FL093310.1|FL093310
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|113664113|gb|DW825770.1|DW825770
genomic: TAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: CATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|83279425|gb|DV943433.1|DV943433
genomic: CATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|31356143|gb|CD440500.1|CD440500
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAATGTGAAAATGGAGCTGAGATTATCAAEST: gi|74244151|gb|DT652065.1|DT652065
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGNAAATGGAGCTGAGATEST: gi|76016358|gb|DT943528.1|DT943528
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGAT
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|94473540|gb|EB702498.1|EB702498
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATTTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|91055730|gb|EB166148.1|EB166148
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|88750787|gb|DY534928.1|DY534928
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|60345140|gb|DN212113.1|DN212113
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|78074927|gb|DV503361.1|DV503361
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTTTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|78118561|gb|DV536945.1|DV536945
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|89251519|gb|DY623305.1|DY623305
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTTTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAAEST: gi|211480276|gb|FL093313.1|FL093313
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
EST: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAG AGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATCATCAA
genomic: TTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgag ... caatatgcagAGATCTCCTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGGGAGGAAGATACAGCGCATTTGCTGCTTGGGAAATTTAAATGGGGTCACGCATTCTTGTCTCTAAACAGgtcagttgagtggaaatttttgtgcttcataccagactgacagtgaatcttaccgaagcaatatacaccaatcaactagtttattatgatgaaattattt
- - - - - - - - - - - TGCTGC
- - - - - - - - - - - - GCTGCT