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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAATGTGCAGAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggtttccaaagccacctgttgagcataaaaaatattcgtgaggtattgacgctagattgacag

Basic information

species Zea mays
transcript GRMZM2G114758_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G114758_T03 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os03g09920.1 (Oryza sativa), 5'ss of exon 9
CTGAAAGCATACTCCCAGTGTGAAAATGGAGCTGAGATTATCAATGTGCAGAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggtttccaaagccacctgttgagcataaaaaatattcgtgaggtattgacgctagattgacag----------------
|| ||||||||||| ||||||||||||||  | ||||| |||||||||||||| || ||||| ||||||||||| | |||||||||| ||||||||||||||||||       |  ||| |  | |     |    ||  |||  |   ||    |   | ||    ||                 
CTCAAAGCATACTCGCAGTGTGAAAATGGCACCGAGATAATCAATGTGCAGAATTCTTGGTTGTCAAGTAACTCTAATGTTCCAAAGTCACCTGTAAACGgtaataattacatctcagctatttttgccataagctaaccatttttagagtgcaaatatt-gaccctcaatatttccgcgtcatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12972397|gb|BG267961.1|BG267961
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|110193278|gb|EC875176.1|EC875176
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATTTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|78544567|gb|DV622065.1|DV622065
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACAAGGAGGAGGGATCTGAAGGTGATTCAG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGG-G--ATCTGAAGGTGATTCAG
EST: gi|86468292|gb|DY234662.1|DY234662
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|6601669|gb|AW256065.1|AW256065
EST:     GAAGTCATGGTTATCAAGTANCTCGAGTGTTCCAAAGCCNCCTGTAAACG                         GGGCAGAGGAATCNCGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|211377879|gb|FL093310.1|FL093310
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|71307452|gb|DR789931.1|DR789931
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|83279425|gb|DV943433.1|DV943433
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|71307450|gb|DR789930.1|DR789930
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|94473540|gb|EB702498.1|EB702498
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|88750787|gb|DY534928.1|DY534928
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|60345140|gb|DN212113.1|DN212113
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|78074927|gb|DV503361.1|DV503361
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATTTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|78118561|gb|DV536945.1|DV536945
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|89251519|gb|DY623305.1|DY623305
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACG                         GGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGGAGGGATCTGAAGGTGATTCAGACG
EST: gi|211480276|gb|FL093313.1|FL093313
EST:     GAAGTCATGGTTATCAAGTAACTCGAGTGTTCAAAAGCCACCTGTAAACT                         GGGCAGAGGAATCACNGCAAAACACGGGAGGTATCTGAANGTGATTCAGAC
genomic: GAAGTCATGGTTATCAAGTAACTCGAGTGTTCCAAAGCCACCTGTAAACGgtaatatggt ... agattgacagGGGCAGAGGAATCACGGCAAAACACGG-AGGGATCTGAAGGTGATTCAGAC