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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaataatttctaaagtgaatatttgcatcttccttttcttattttttgaaggttccgggaacacctaacgtatttcttgccatacaccgaatac...

Basic information

species Zea mays
transcript GRMZM2G113619_T04
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os09g24650.3 (Oryza sativa), 5'ss of exon 8
CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaataatttctaaagtgaatatttgcatcttccttttcttattttttgaaggttccgggaacacctaacg-tatttcttgccatacaccgaatac
|||||||| |||||||||||||| || ||||| || ||||| || |||||||||||| | |||||||||||||||||||||||| |||||||||||   | ||     | |||| |      || |||   |  ||    ||||   |  |  ||||    | |   | ||  |||  ||   ||   | |
CTTTTTCTATTGCGTGCTGCTGGATTTCTGCTACCATTCTATATAATGGCTTGGGCAGTGAGTATCTTGCAGCGCCGCAGACAGCGACAGgtcagtatgttatcatacaggtgatttacattattttctactattttaaatttgttagaacttggaatgtgtgataattttatttgttat-tgccttgttc

upper sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA01G05800.1 (Glycine max), 5'ss of exon 7
CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaataatttctaaagtgaatatttgcatcttccttttcttattttttga---aggttccggga---acacctaacgtatttcttgccatacaccgaatac
|||||  || | ||||||||||| || ||  | || | |||||||||||||||||||||||||||  ||||||| ||  |||| ||||| ||||||   |||||       | ||||||| ||  ||   || | | | ||| |    | ||| | | |   |  |  |  | |    |     || || |     
CTTTTCTTGCTTCGTGCTGCTGGATTTCTATTACCTTGCTACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAgtcagtct-taattatagttatcaatattttcagttttgcttgcatgtgtttggtttcacgttacagaattgattctgagtgcagaattgattttagacag-----

upper sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA20G04870.1 (Glycine max), 5'ss of exon 6
CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagtt--aataatttctaaagtgaatatttgcatcttccttttcttattttttgaaggttccgggaacacctaacgtatttcttgccatacaccgaatac-
|||||  || | |||||||||||||| ||  | || | ||| ||||||||||||||||||||||| ||||| |||||  |||| ||||| || ||||  | |  |   |      ||| ||||  ||   |||| || |||   ||  ||||  |        | |  | || |||      | || | |   
CTTTTCTTGCTTCGTGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAgtaagtttcagtcttggttctgactaatttttgt-tccgactttgctaattcggtgttggttt-gttctgttttgaaatcttgctttttg-gctccaactttg

upper sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA02G11960.1 (Glycine max), 5'ss of exon 7
CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaataatttctaaagtgaatatttgcatcttccttttcttattttttgaa--ggttccggga-----acacctaacgtatttctt----gccatacaccgaatac----------------------------------------
|||||  || | ||||| ||||| || ||  | || | |||||||||||||||||||||||||||  ||||||| ||  |||| ||||| ||||||   | |||       | ||||||||  | |   ||| |||| |   || |    || ||| |     | || | | |  ||  ||    ||   |  |  ||                                           
CTTTTCTTGCTTCGTGCCGCTGGATTTCTATTACCTTGCTACATCATGGCTTGGGCAATCAGTATTCTGCAGCGTCGGCGACAAAGACAAgtcagtct-tcattatagttattaatatttgt-tttggttttgcttagtcagtgtatcattttcggaataaaaatactttatggtttctttttaggctgcaatctaaaagtttgtgatcatatctcacatttttgtgttatggtgaaacag

upper sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 9
lower sequence: GLYMA07G35750.2 (Glycine max), 5'ss of exon 6
CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaataatttctaaagtgaatatttgcatcttc-cttttcttattttttgaaggttccgggaacacctaa--cgtatttcttgccatacaccgaatac
|||||  || | || ||||||||||| ||  | || | ||| ||||||||||||||||||||||| ||||| |||||  |||| ||||| || ||||   | | |      ||| || ||  ||  |   |||||| |||   ||  ||||            ||  | |  |||||| |    ||    |  
CTTTTCTTGCTTCGAGCTGCTGGTTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGCCGGCGACAAAGACAAgtaagttt-cagtcttggttctgactaattttattctgatttttctaattcggtgttggtttgttctgttttgaaatcatgcttcttggctccaactttgt--

upper sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 9
lower sequence: AT2G02960.2 (Arabidopsis thaliana), 5'ss of exon 7
CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagt----taataatttctaaagtgaatattt------gcatcttccttttcttattttttgaaggttccgggaacacctaacgtattt-cttgccatacaccgaatac----
||| | ||| | || |||||||| || || ||||| | ||| |||||||||||||| ||||||||  | |||||||| |||||||||||||| |||    ||| || |  |  |  || | ||       |  | ||  |||||||| | ||| | |  ||         |    ||||   |||    ||  |||| |      
CTTGTCCTGCTCCGAGCTGCTGGATTTCTTCTTCCATGCTATATCATGGCTTGGGCCATCAGTATTCTACAGCGCCGAAGACAGAGACAGgttagtagtataagaactcatgcaaggatttttccggacagtcttttttttttcttactgttttatgaatcaaactgagtcactggtatcgacttaatgtaacccgattgaacag

upper sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 9
lower sequence: AT2G02960.5 (Arabidopsis thaliana), 5'ss of exon 5
----------CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagt----taataatttctaaagtgaatattt------gcatcttccttttcttattttttgaaggttccgggaacacctaacgtattt-cttgccatacaccgaatac----
          ||| | ||| | || |||||||| || || ||||| | ||| |||||||||||||| ||||||||  | |||||||| |||||||||||||| |||    ||| || |  |  |  || | ||       |  | ||  |||||||| | ||| | |  ||         |    ||||   |||    ||  |||| |      
CTTATTTTAGCTTGTCCTGCTCCGAGCTGCTGGATTTCTTCTTCCATGCTATATCATGGCTTGGGCCATCAGTATTCTACAGCGCCGAAGACAGAGACAGgttagtagtataagaactcatgcaaggatttttccggacagtcttttttttttcttactgttttatgaatcaaactgagtcactggtatcgacttaatgtaacccgattgaacag

upper sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 9
lower sequence: Vv17s0000g06230.t01 (Vitis vinifera), 5'ss of exon 7
CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaataatttctaaagtgaatatttgcatcttccttttcttattttttgaaggt----tccgggaacacctaacgtatttcttgccatacaccgaatac--
||||| ||| | || |||||||||||||| || || | |||||| ||||| ||||| |||||||| |||||||| || ||||| |||||||| |||   |   ||      || || |||| ||           |        ||  |    |||   |  |||||  ||   | |  | | | |   ||| |  
CTTTTCCTGCTTCGAGCTGCTGGTTTCCTTCTCCCTTGCTACATTATGGCCTGGGCTATCAGTATATTGCAGCGTCGAAGACAAAGACAGgttagtgtttggctt------tgcatttttgtatagaataaaatatgaagagaaaaaatattctccttcaggacctatggtgggtatgccaaaagaaaaaatgcag

upper sequence: GRMZM2G113619_T04 (Zea mays), 5'ss of exon 9
lower sequence: Vv01s0026g02470.t01 (Vitis vinifera), 5'ss of exon 9
CTTTTTCTGTTGCGTGCTGCTGGTTTCCTGCTTCCGTTCTACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagt----taataattt----ctaaagtgaatatttgcatcttccttttcttattttttgaaggttccgggaacacctaacgtatttcttgccatacaccgaatac
|||||  || | || |||||||| ||  | || || | |||||| ||||| ||||| || |||||||||||||| || |||||||| ||||| |||      ||| |||     |||    |||  ||  |  ||||  |    || | ||     | |       | ||  | | | |||| |  |  ||       
CTTTTCTTGCTTCGGGCTGCTGGGTTTTTACTGCCCTGCTACATTATGGCCTGGGCCATTAGTATCTTGCAGCGTCGAAGACAGAGGCAGgttagtgtctccatattttgtggttaaccataattcttatacattcccatcaacatgtcttttct-tccttttcctatctgccctttctcttcctttgtac-------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76280759|gb|DV020327.1|DV020327
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|37399815|gb|CF637245.1|CF637245
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|78086641|gb|DV515034.1|DV515034
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|19769762|gb|BQ034483.1|BQ034483
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|50326768|gb|CO521894.1|CO521894
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|71766652|gb|DR964589.1|DR964589
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|6827480|gb|AW331123.1|AW331123
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|50325342|gb|CO520468.1|CO520468
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTTTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|93284055|gb|EB676319.1|EB676319
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|78106313|gb|DV524731.1|DV524731
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|93283252|gb|EB675516.1|EB675516
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGAC--AG--A-                         GA--CAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|19769358|gb|BQ034079.1|BQ034079
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|71311804|gb|DR792363.1|DR792363
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|60338944|gb|DN205917.1|DN205917
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|94472719|gb|EB701677.1|EB701677
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|91877838|gb|EB407795.1|EB407795
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|211143061|gb|FL281156.1|FL281156
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|60337669|gb|DN204642.1|DN204642
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|19822097|gb|BQ048121.1|BQ048121
EST:     ACATCATGGCGTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
EST: gi|78106314|gb|DV524732.1|DV524732
EST:     ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAG                         GAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC
genomic: ACATCATGGCTTGGGCAATCAGTATCTTGCAGCGCCGCAGACAGAGACAGgtcagttaat ... gtctgtccagGAGGCAGCTGCTCTAGCTGCAGCGGAGGTGGCATTCATCCTGCAGTCAGGC