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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAGAGTCGAGCGAATCACAAGAGAGCCGTCAAACTTTGGGGTCTGCTGGTCTCTCTCTTCACTACGCTAATATCATTTCTCAGATTGACAATATTgtaagtatctcgtggttactcaaaaaaaaagagtaatgttgtcatatttacaaacctcatgctgctagctagtgagcataattggaacgtacttgcaacaaaattctgtctccaactacaatttactggggaactgtttgctgaccgatatccattgcttaatttaag

Basic information

species Zea mays
transcript GRMZM2G113439_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G113439_T02 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g34650.1 (Oryza sativa), 5'ss of exon 5
--TTGGAGAGTCGAGCGAATCACAAGAGAGCCGTCAAACTTTGGGGTCTGCTGGTCTCTCTCTTCACTACGCTAATATCATTTCTCAGATTGACAATATTgtaagtatctcgt--ggttactcaaaaaaaaagagtaatgttgtcatatttacaaacctcatgctgctagctagtgagcataattggaacgtacttgcaacaaaattctgtctccaactacaatttactggggaactgtttgctgaccgatatccattgcttaatttaag
   |  | | | ||   || |   |||||||||||| || || || || ||||| ||||| || ||||| || ||||||||||| ||||||||||| ||||||||| | || |  ||||| | | | |       |  | |  |||| |  | | ||   ||   | |      | ||| ||   ||   | |||  |||     | |                                                              
AGCTTTACAATTGAATCAACCTTCAGAGAGCCGTCAGACGTTAGGATCAGCTGGCCTCTCGCTGCACTATGCCAATATCATTTCACAGATTGACAACATTgtaagtttttcttcaggttatttatatat------ttttctgttcatgtcaatacacaaaatttagatgatct-taagcttatcagg--tgaactgtcaatgttttccc-------------------------------------------------------------