1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACTGGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctacttctgtttgactgtatatctgttccaatcttcaatagacgaattaacatactgtggtatgtgcggtgtacatgctaaatttttgaacttcaatataatctctctgataaatttatatttgttgtactatgctttcctgattggatacagttggaatgttgtttgctttgcag
species | Zea mays |
transcript | GRMZM2G111713_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTEST: gi|32845899|gb|CD985580.1|CD985580
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCACG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTEST: gi|76923556|gb|DV169545.1|DV169545
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTEST: gi|4827723|gb|AI668415.1|AI668415
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTEST: gi|50337822|gb|CO532948.1|CO532948
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTEST: gi|89251080|gb|DY622866.1|DY622866
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTEST: gi|37383724|gb|CF628889.1|CF628889
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGG-CCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTEST: gi|148938687|gb|EC883023.2|EC883023
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTEST: gi|71443106|gb|DR824156.1|DR824156
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAGGCTTTTATAEST: gi|18181535|gb|BM382745.1|BM382745
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATA
EST: TGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTEST: gi|89248722|gb|DY620508.1|DY620508
genomic: TGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTEST: gi|71420007|gb|DR804974.1|DR804974
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTEST: gi|211237149|gb|FL440871.1|FL440871
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTTEST: gi|89758224|gb|DY687488.1|DY687488
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTEST: gi|32913045|gb|CF017857.1|CF017857
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCT
EST: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATG ATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
genomic: GGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctact ... tgctttgcagATTGGCCTCGATAAGAATGACCTGGATAAAGCTTTTATACAGCTTACACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TATAAAAAATGAACTAAAGAGAAGACAGTCCATGTGGAATTCTGTACACTGGGAACTGGTGGAGCCTGCTGTTAGTATCAGAACTTTGAGGGCTCGCATGgtaagctacttctgtttgactgtatatctgttccaatcttcaatagacgaattaacatactgtggtatgtgcggtgtacatgctaaatttttgaacttcaatataatctctctgataaatttatatttgttgtactatgctttcctgattggatacagttggaatgttgtttgctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT