1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GAATTGCTTGTCTTGATTTTAACCTTCAGAAGACAAAAATGCAACTTGGTGTCCAAGTTCTCGTAACTGATCCAAGAGAACTTGAGAAGATTCGTCAGAGgtatttgcattctgtgttctgatactttagaatttgtttgcctgtttctggtagaatcagcactgtgaatacacaatatttatatcttctttcatgttac...
species | Zea mays |
transcript | GRMZM2G110626_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTCCAAGTTCTCGTAACTGATCCAAGAGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGGATCGATAAAATTCTCAAGTCTGGAGCEST: gi|31612209|gb|CD568831.1|CD568831
genomic: GTCCAAGTTCTCGTAACTGATCCAAGAGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttgtcagAGAATCTGACATAACAAAGGAGCGGATCGATAAAATTCTCAAGTCTGGAGC
EST: GTCCAAGTTCTCGTAACTGATCCAAGAGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGGATCGATAAAATTCTCAAGTCTGGAGCEST: gi|29130817|gb|CB381521.1|CB381521
genomic: GTCCAAGTTCTCGTAACTGATCCAAGAGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttgtcagAGAATCTGACATAACAAAGGAGCGGATCGATAAAATTCTCAAGTCTGGAGC
EST: GTCCAAGTTCTCGTAACTGATCCAAGAGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGGATCGATAAAATTCTCAAGTCTGGAGCEST: gi|8103020|gb|AW927688.1|AW927688
genomic: GTCCAAGTTCTCGTAACTGATCCAAGAGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttgtcagAGAATCTGACATAACAAAGGAGCGGATCGATAAAATTCTCAAGTCTGGAGC
EST: GTCCAAGTTCTCGTAACTGATCCAAGAGAACTTGAGAAGATTCGTCAGAG AGAATCTGACATAACAAAGGAGCGGATCGATAAAATTCTCAAGTCTGGAGC
genomic: GTCCAAGTTCTCGTAACTGATCCAAGAGAACTTGAGAAGATTCGTCAGAGgtatttgcat ... tttttgtcagAGAATCTGACATAACAAAGGAGCGGATCGATAAAATTCTCAAGTCTGGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTGCTTGTCTTGATTTTAACCTTCAGAAGACAAAAATGCAACTTGGTGTCCAAGTTCTCGTAACTGATCCAAGAGAACTTGAGAAGATTCGTCAGAGgtatttgcattctgtgttctgatactttagaatttgtttgcctgtttctggtagaatcagcactgtgaatacacaatatttatatcttctttcatgttac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA