1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GAGGGCCGTACCCAAATTTTCAAGATCCATACACGTACCATGAACTGTGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttcatctgagtggtttctgctttattcgatgacagacgatcaggttctcacattgccttgcttgttgctccag
species | Zea mays |
transcript | GRMZM2G110185_T03 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCAAAAACACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|60342770|gb|DN209743.1|DN209743
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|78085798|gb|DV514191.1|DV514191
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|211174291|gb|FL481216.1|FL481216
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGTGEST: gi|60350973|gb|DN217946.1|DN217946
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|12973054|gb|BG268289.1|BG268289
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|5030783|gb|AI714977.1|AI714977
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTATACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGTGEST: gi|19436439|gb|BM952849.1|BM952849
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGTGEST: gi|29129891|gb|CB380595.1|CB380595
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|1298504|gb|W21754.1|W21754
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCC-AACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACEST: gi|60344174|gb|DN211147.1|DN211147
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTAC
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGTGEST: gi|5804712|gb|AI979682.1|AI979682
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCTCGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCEST: gi|211078711|gb|FL469455.1|FL469455
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGC
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|60398345|gb|DN231161.1|DN231161
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGTGEST: gi|5740404|gb|AI948094.1|AI948094
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|1298502|gb|W21752.1|W21752
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: CGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTAGCCC-AACTCTACTG GANCTGATATAAGGAGCGTTEST: gi|12968378|gb|BG265324.1|BG265324
genomic: CGAGATATTCGTTTCGAGCTTCTGGCACGGCTCT-GCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTT
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|211007573|gb|FL233622.1|FL233622
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|6563830|gb|AW231362.1|AW231362
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: TTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCCCAGAAGCCGGGATGTACGCCATTCGCGEST: gi|60397964|gb|DN230780.1|DN230780
genomic: TTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|61119189|gb|DN560150.1|DN560150
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCGEST: gi|4753546|gb|AI657456.1|AI657456
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGTGEST: gi|37376995|gb|CF625066.1|CF625066
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
EST: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTG GAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
genomic: GCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttc ... gttgctccagGAGCTGATATAAGGAGCGTTTGCACAGAAGCCGGGATGTACGCCATTCGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGGGCCGTACCCAAATTTTCAAGATCCATACACGTACCATGAACTGTGAGCGAGATATTCGTTTCGAGCTTCTGGCACGGCTCTGCCCCAACTCTACTGgtgtggtttcatctgagtggtttctgctttattcgatgacagacgatcaggttctcacattgccttgcttgttgctccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT