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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGACCCGTCACAGAAGAACACACTCCTCGTTTTGAAATTTCTTCCATTTATGATTGGCTATTTCTCTTTGTCAGTGCCATCAGGATTGTCTATTTATTGgtatgttcatgtcttttttttctaactacaaatatgttcatatattcttgttgcatattatgtcgctagttgcttcaaacaagatcatggccccttccctgttcagttttcactgaattttacgattaatcaaatccgcaagtttttttttgtattgactccatgttttccattag

Basic information

species Zea mays
transcript GRMZM2G110063_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G110063_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os01g05800.1 (Oryza sativa), 5'ss of exon 8
ATGACCCGTCACAGAAGAACACACTCCTCGTTTTGAAATTTCTTCCATTTATGATTGGCTATTTCTCTTTGTCAGTGCCATCAGGATTGTCTATTTATTGgtatgttcatgtcttttttttctaactacaaatatgttcatatattcttgttgcatattatgtcgctagttgcttcaaacaagatcatgg--ccccttccctgttcagttttcactgaattttacgattaatcaaatccgcaagtttttttttgtattgactccatgttttccattag
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ATGATCCATCGCAGAAGAACACACTGCTTGTTTTGAAATTTCTTCCATTTATGATAGGGTGGTTCTCTTTGTCAGTGCCGTCAGGGTTGTCCATTTATTGgtatgtgcat-----ttgctattagttgtatgagtgttt---cagtcatgttccatgctatagtgcta--tgcctcata-gagattgtgggactcctccactgctca---ttaact---tcttgcaattgatcaaatccaata-------tgtgtattgactccatgtttgctatcag