1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTATGGGTGGCCATGCCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgttctatatccatattttgttctgtacattatcaaacggtgaggccctaagttgttttgtatgatcttttcgtctttgcag
species | Zea mays |
transcript | GRMZM2G108849_T01 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|67013050|gb|CO441799.1|CO441799
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|33100201|gb|CF060161.1|CF060161
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|37383229|gb|CF628607.1|CF628607
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|32924024|gb|CF028836.1|CF028836
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGCCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|5922310|gb|AW055599.1|AW055599
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|60347914|gb|DN214887.1|DN214887
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGAAACCAGTGATGCTGGAGAGGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|33103672|gb|CF063632.1|CF063632
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|6095470|gb|AW120137.1|AW120137
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|32941550|gb|CF046369.1|CF046369
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|5005885|gb|AI711947.1|AI711947
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|37385964|gb|CF630150.1|CF630150
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|161586543|gb|EY957605.1|EY957605
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG CTTCTGGCAAATCAGTGGAAEST: gi|37376423|gb|CF624736.1|CF624736
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAA
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTCATGCTGGAGAGGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|32941251|gb|CF046070.1|CF046070
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|24934282|gb|CA452500.1|CA452500
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGATEST: gi|5361062|gb|AI795677.1|AI795677
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
EST: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAAGATTACTGG CTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
genomic: CCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgtt ... gtctttgcagCTTCTGGCAAATCAGTGGAATAGAGGCTGGGGCGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAATCTGGAGTGTACAAGCACATCACCGGTGGCATTATGGGTGGCCATGCCGTCAAGTTGATTGGATGGGGAACCAGTGATGCTGGAGAGGATTACTGGgtatgttgttctatatccatattttgttctgtacattatcaaacggtgaggccctaagttgttttgtatgatcttttcgtctttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT