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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactgcccactcttcaaactagacaccaaaataaaagggaccagtcttacatgcatgttttgttaatccctatgtttgggtgtcttag

Basic information

species Zea mays
transcript GRMZM2G108829_T02
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os02g47220.2 (Oryza sativa), 5'ss of exon 9
ATCTGTTGGTTAGCAAAGATGTCATAAAGCTAGCAGACTTTGGTCTTGCAAGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactgcccactcttcaaactagacaccaaaataaaagggaccagtcttacatgcatgttttgttaatccctatgtttgggtgtcttag
||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| ||||  |||| ||||| ||||||||||| |||||||||||||||| |  || | ||  ||  ||   ||    | | |||     ||  |  |   |  |||||     |   | | ||||||    ||| ||
ATCTGTTGGTTAGCAAAGATGTCATAAAGCTGGCGGACTTTGGTCTTGCAAGGGAAGTTACATCCGTGCCACCATACACAGAATATGTGTCAACTCGCTGgttagta--gcactctactcgcac---acgtggacacaaatc---ccttttctttgttaatgttgatcca---catgtgtttgaacatctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60349468|gb|DN216441.1|DN216441
EST:     AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|8103639|gb|AW928260.1|AW928260
EST:     AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|211496286|gb|FL041698.1|FL041698
EST:     AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTATTGCTCCAGTCATATGCTTATGATTCTGCAGT
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|32871065|gb|CF010747.1|CF010747
EST:     AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|32932540|gb|CF037352.1|CF037352
EST:     AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|31350422|gb|CD434779.1|CD434779
EST:     AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|32869779|gb|CF009461.1|CF009461
EST:     AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|47961778|gb|CN844487.1|CN844487
EST:     AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCACCTCGCTG                         GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|67011156|gb|CO439905.1|CO439905
EST:     AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|211496285|gb|FL041697.1|FL041697
EST:     AGGGAAGTTTCATCATTGCCGCCATATACAGAATATGTCTCAACTCGCTG                         GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: AGGGAAGTTTCATCTTTGCCGCCATATACAGAATATGTCTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
EST: gi|5932684|gb|AW057045.1|AW057045
EST:     CTCAACTCGCTG                         GTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT
genomic: CTCAACTCGCTGgttagcactg ... ggtgtcttagGTATCGGGCACCAGAAGTATTGCTCCAGTCATCTGCTTATGATTCTGCAGT