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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAATTTGTACATGAAAAAGGATCATCAATTGAAGAAGTCATTGAGGAACAGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTGgtatcccccctccctgggtttgtagtttgtactgttacttgcattcctccgtcttaattcgtaaccttgcatttttgcttctcctgcag

Basic information

species Zea mays
transcript GRMZM2G108115_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G108115_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os03g52340.2 (Oryza sativa), 5'ss of exon 8
-CAAATTTGTACATGAAAAAGGATCATCAATTGAAGAAGTCATTGAGGAACAGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTGgtatc------ccccctccctgggtttgtagtttgtactgttacttgcattcctccgtcttaattcgtaaccttgcatttttgcttctcctgcag
 ||| |||||||||||||||||| |||||||||| || |||||| |  |||||| | |||| || ||  |||   ||||||||   | ||||| | || | |||             | |||  |   |   ||| ||     |    ||| |      | |  |||||   |||  |  | || ||   ||||||
TCAACTTTGTACATGAAAAAGGACCATCAATTGAGGATGTCATTAAACAACAGAGCTCTTCTACTGTG-AAACCGGTGTTTCCTATCTGAATCGTGAAATAgtaagtgttaatttttttcctcaggcagatttttttaaaaaaaaagacatactcataccct--ttcgt--tcttcaacatatggttt--ctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211043445|gb|FL436669.1|FL436669
EST:     AGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTG                         GACTTCCTCTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATTGCAAT
genomic: AGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTGgtatcccccc ... tctcctgcagGACTTCCTCTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATTGCAAT
EST: gi|37391024|gb|CF632751.1|CF632751
EST:     AGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTG                         GACTTCCTCTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATTGCAAT
genomic: AGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTGgtatcccccc ... tctcctgcagGACTTCCTCTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATTGCAAT
EST: gi|149060175|gb|EE157145.2|EE157145
EST:     AGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTG                         GACTTCTTTTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATTGCAAT
genomic: AGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTGgtatcccccc ... tctcctgcagGACTTCCTCTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATTGCAAT
EST: gi|31350402|gb|CD434759.1|CD434759
EST:     ACATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTG                         GACTTCCTCTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATTGCAAT
genomic: AGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTGgtatcccccc ... tctcctgcagGACTTCCTCTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATTGCAAT
EST: gi|31363348|gb|CD447705.1|CD447705
EST:     AGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTG                         GACTTCCTCTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATTGCAAT
genomic: AGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTGgtatcccccc ... tctcctgcagGACTTCCTCTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATTGCAAT
EST: gi|24934189|gb|CA452407.1|CA452407
EST:     AGATCCCTTCAACGGTTCANAAGAGTGTTTCCATGCCGAATCTTANACTG                         GACTTCCTCTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATTTGCA-
genomic: AGATCCCTTCAACGGTTCAAAAGAGTGTTTCCATGCCGAATCTTAAACTGgtatcccccc ... tctcctgcagGACTTCCTCTGAGATGTATGAGAGTAATTTGTAGTTATACAAGATT-GCAA