1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAAgtatgctatttattcctatgtattaatagatcttgaggtctcattaatatttgtataacaatattgctcttactagttttaaatgttatttgttgcgctcttggttaacttgttatggcatgtgtag
species | Zea mays |
transcript | GRMZM2G107731_T02 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCCA TTTGAAAGAGAAA-TGCTGGAACTTEST: gi|37394977|gb|CF634768.1|CF634768
genomic: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAAgtatgctatt ... gcatgtgtagTT-GAAAGAGAAAATGCTGGAACTT
EST: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAA TEST: gi|37394977|gb|CF634768.1|CF634768
genomic: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAAgtatgctatt ... gcatgtgtag-
EST: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAA TEST: gi|213169996|gb|FM189145.1|FM189145
genomic: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAAgtatgctatt ... gcatgtgtag-
EST: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAA TTGAAAGAGAAAATGCTGGAACTTGAACTTGCTGATCTGAGACTTCAACAAEST: gi|32931571|gb|CF036383.1|CF036383
genomic: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAAgtatgctatt ... gcatgtgtagTTGAAAGAGAAAATGCTGGAACTTGAACTTGCTGATCTGAGACTTCAACAA
EST: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCCCCAA TTGAAAGAGAAAATGCTGGAACTTGAACTTGCTGATCTGAGACTTCAACAAEST: gi|31354731|gb|CD439088.1|CD439088
genomic: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAAgtatgctatt ... gcatgtgtagTTGAAAGAGAAAATGCTGGAACTTGAACTTGCTGATCTGAGACTTCAACAA
EST: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCCCCAA TTGAAAGAGAAAATGCTGGAEST: gi|60358220|gb|DN225193.1|DN225193
genomic: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAAgtatgctatt ... gcatgtgtagTTGAAAGAGAAAATGCTGGA
EST: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAA TTGAAAGAGAAAATGCTGGAACTTGAACTTGCTGATCTGAGACTTCAACAA
genomic: AAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAAgtatgctatt ... gcatgtgtagTTGAAAGAGAAAATGCTGGAACTTGAACTTGCTGATCTGAGACTTCAACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAGAAGTAAACTGAAAGACCTTGCTGATCAATATAACATTACTCAGCAGAAATATGCTCACCAAgtatgctatttattcctatgtattaatagatcttgaggtctcattaatatttgtataacaatattgctcttactagttttaaatgttatttgttgcgctcttggttaacttgttatggcatgtgtag
- - - - - - - - - - - - GCTGAT